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Merge pull request #204 from nomadscientist/seurat_add
Add Seurat v5 tools
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,28 @@ | ||
| tool_panel_section_label: HCA-Seurat | ||
| tools: | ||
| - name: seurat_create_seurat_object | ||
| owner: ebi-gxa | ||
| - name: seurat_export_cellbrowser | ||
| owner: ebi-gxa | ||
| - name: seurat_filter_cells | ||
| owner: ebi-gxa | ||
| - name: seurat_find_clusters | ||
| owner: ebi-gxa | ||
| - name: seurat_find_markers | ||
| owner: ebi-gxa | ||
| - name: seurat_find_neighbours | ||
| owner: ebi-gxa | ||
| - name: seurat_find_variable_genes | ||
| owner: ebi-gxa | ||
| - name: seurat_normalise_data | ||
| owner: ebi-gxa | ||
| - name: seurat_dim_plot | ||
| owner: ebi-gxa | ||
| - name: seurat_read10x | ||
| owner: ebi-gxa | ||
| - name: seurat_run_pca | ||
| owner: ebi-gxa | ||
| - name: seurat_run_tsne | ||
| owner: ebi-gxa | ||
| - name: seurat_scale_data | ||
| owner: ebi-gxa |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,83 @@ | ||
| install_repository_dependencies: true | ||
| install_resolver_dependencies: false | ||
| install_tool_dependencies: false | ||
| tool_panel_section_label: HCA-Seurat | ||
| tools: | ||
| - name: seurat_create_seurat_object | ||
| owner: ebi-gxa | ||
| revisions: | ||
| - f8865ae30723 | ||
| tool_panel_section_id: seurat | ||
| tool_panel_section_label: Seurat | ||
| - name: seurat_export_cellbrowser | ||
| owner: ebi-gxa | ||
| revisions: | ||
| - 36221da750e8 | ||
| tool_panel_section_id: seurat | ||
| tool_panel_section_label: Seurat | ||
| - name: seurat_filter_cells | ||
| owner: ebi-gxa | ||
| revisions: | ||
| - cd9f564bd63f | ||
| tool_panel_section_id: seurat | ||
| tool_panel_section_label: Seurat | ||
| - name: seurat_find_clusters | ||
| owner: ebi-gxa | ||
| revisions: | ||
| - d541e9e62beb | ||
| tool_panel_section_id: seurat | ||
| tool_panel_section_label: Seurat | ||
| - name: seurat_find_markers | ||
| owner: ebi-gxa | ||
| revisions: | ||
| - 07fc9f4841b3 | ||
| tool_panel_section_id: seurat | ||
| tool_panel_section_label: Seurat | ||
| - name: seurat_find_neighbours | ||
| owner: ebi-gxa | ||
| revisions: | ||
| - ba897c57bdd9 | ||
| tool_panel_section_id: seurat | ||
| tool_panel_section_label: Seurat | ||
| - name: seurat_find_variable_genes | ||
| owner: ebi-gxa | ||
| revisions: | ||
| - 948fc0276b4f | ||
| tool_panel_section_id: seurat | ||
| tool_panel_section_label: Seurat | ||
| - name: seurat_normalise_data | ||
| owner: ebi-gxa | ||
| revisions: | ||
| - 3f49bc9c9213 | ||
| tool_panel_section_id: seurat | ||
| tool_panel_section_label: Seurat | ||
| - name: seurat_dim_plot | ||
| owner: ebi-gxa | ||
| revisions: | ||
| - 64174ac50d78 | ||
| tool_panel_section_id: seurat | ||
| tool_panel_section_label: Seurat | ||
| - name: seurat_read10x | ||
| owner: ebi-gxa | ||
| revisions: | ||
| - f5db0e853f57 | ||
| tool_panel_section_id: seurat | ||
| tool_panel_section_label: Seurat | ||
| - name: seurat_run_pca | ||
| owner: ebi-gxa | ||
| revisions: | ||
| - 8ded486b0014 | ||
| tool_panel_section_id: seurat | ||
| tool_panel_section_label: Seurat | ||
| - name: seurat_run_tsne | ||
| owner: ebi-gxa | ||
| revisions: | ||
| - 0db997e4a81d | ||
| tool_panel_section_id: seurat | ||
| tool_panel_section_label: Seurat | ||
| - name: seurat_scale_data | ||
| owner: ebi-gxa | ||
| revisions: | ||
| - 5e9ba303f9e1 | ||
| tool_panel_section_id: seurat | ||
| tool_panel_section_label: Seurat |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,28 +1,16 @@ | ||
| tool_panel_section_label: Seurat | ||
| tools: | ||
| - name: seurat_create_seurat_object | ||
| owner: ebi-gxa | ||
| - name: seurat_export_cellbrowser | ||
| owner: ebi-gxa | ||
| - name: seurat_filter_cells | ||
| owner: ebi-gxa | ||
| - name: seurat_find_clusters | ||
| owner: ebi-gxa | ||
| - name: seurat_find_markers | ||
| owner: ebi-gxa | ||
| - name: seurat_find_neighbours | ||
| owner: ebi-gxa | ||
| - name: seurat_find_variable_genes | ||
| owner: ebi-gxa | ||
| - name: seurat_normalise_data | ||
| owner: ebi-gxa | ||
| - name: seurat_dim_plot | ||
| owner: ebi-gxa | ||
| - name: seurat_read10x | ||
| owner: ebi-gxa | ||
| - name: seurat_run_pca | ||
| owner: ebi-gxa | ||
| - name: seurat_run_tsne | ||
| owner: ebi-gxa | ||
| - name: seurat_scale_data | ||
| owner: ebi-gxa | ||
| - name: create_seurat | ||
| owner: iuc | ||
| - name: inspect_and_manipulate | ||
| owner: iuc | ||
| - name: integrate | ||
| owner: iuc | ||
| - name: normalize_select_features_scale | ||
| owner: iuc | ||
| - name: reduce_dimensions | ||
| owner: iuc | ||
| - name: neighbors_clusters_markers | ||
| owner: iuc | ||
| - name: plot | ||
| owner: iuc |
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