Skip to content

Commit

Permalink
fetch all tools bot - step tool filter
Browse files Browse the repository at this point in the history
  • Loading branch information
github-actions committed Jun 25, 2024
1 parent 6f95215 commit 00094d1
Show file tree
Hide file tree
Showing 6 changed files with 62 additions and 61 deletions.
18 changes: 9 additions & 9 deletions results/biodiversity/index.html
Original file line number Diff line number Diff line change
Expand Up @@ -629,7 +629,7 @@
<td>This tool can get annotation for a generic set of IDs, using the Bioconductor annotation data packages. Supported organisms are human, mouse, rat, fruit fly and zebrafish. The org.db packages that are used here are primarily based on mapping using Entrez Gene identifiers. More information on the annotation packages can be found at the Bioconductor website, for example, information on the human annotation package (org.Hs.eg.db) can be found here.</td>
<td>Annotation</td>
<td></td>
<td>Up-to-date</td>
<td>To update</td>
<td>https://github.com/galaxyproject/tools-iuc/tree/master/tools/annotatemyids</td>
<td>Genome annotation</td>
<td>annotatemyids</td>
Expand All @@ -638,7 +638,7 @@
<td>https://github.com/galaxyproject/tools-iuc/tree/main/tools/annotatemyids</td>
<td>3.18.0</td>
<td>bioconductor-org.hs.eg.db</td>
<td>3.18.0</td>
<td></td>
<td>Annotation</td>
<td></td>
<td>1</td>
Expand Down Expand Up @@ -769,7 +769,7 @@
<td></td>
<td></td>
<td></td>
<td>Up-to-date</td>
<td>To update</td>
<td>https://github.com/rjchallis/assembly-stats</td>
<td>Assembly</td>
<td>assembly_stats</td>
Expand All @@ -778,7 +778,7 @@
<td>https://github.com/galaxyproject/tools-iuc/tree/main/tools/assembly-stats</td>
<td>17.02</td>
<td>rjchallis-assembly-stats</td>
<td>17.02</td>
<td></td>
<td></td>
<td></td>
<td>0</td>
Expand Down Expand Up @@ -1189,7 +1189,7 @@
<td></td>
<td></td>
<td></td>
<td>Up-to-date</td>
<td>To update</td>
<td>https://github.com/institut-de-genomique/biscot</td>
<td>Assembly</td>
<td>biscot</td>
Expand All @@ -1198,7 +1198,7 @@
<td>https://github.com/galaxyproject/tools-iuc/tree/main/tools/biscot</td>
<td>2.3.3</td>
<td>biscot</td>
<td>2.3.3</td>
<td></td>
<td></td>
<td></td>
<td>0</td>
Expand Down Expand Up @@ -6453,11 +6453,11 @@
<td></td>
<td>0</td>
<td>0</td>
<td>1</td>
<td>0</td>
<td>0</td>
<td>0</td>
<td>0</td>
<td>0</td>
<td>1</td>
<td>0</td>
<td>0</td>
<td>0</td>
Expand Down Expand Up @@ -7343,7 +7343,7 @@
<td>spades_biosyntheticspades, spades_coronaspades, spades_metaplasmidspades, metaspades, spades_metaviralspades, spades_plasmidspades, rnaspades, spades_rnaviralspades, spades</td>
<td>SPAdes is an assembly toolkit containing various assembly pipelines. It implements the following 4 stages: assembly graph construction, k-bimer adjustment, construction of paired assembly graph and contig construction.</td>
<td>spades</td>
<td>rnaspades, metaviralspades, rnaviralspades, spades, metaspades, metaplasmidspades, plasmidspades, coronaspades, biosyntheticspades</td>
<td>rnaspades, spades, biosyntheticspades, metaspades, rnaviralspades, plasmidspades, coronaspades, metaviralspades, metaplasmidspades</td>
<td></td>
<td>SPAdes</td>
<td>St. Petersburg genome assembler – is intended for both standard isolates and single-cell MDA bacteria assemblies. SPAdes 3.9 works with Illumina or IonTorrent reads and is capable of providing hybrid assemblies using PacBio, Oxford Nanopore and Sanger reads. Additional contigs can be provided and can be used as long reads.</td>
Expand Down
Loading

0 comments on commit 00094d1

Please sign in to comment.