Add editing and refactor entire code base #52
Workflow file for this run
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
name: tests | |
on: | |
push: | |
branches: [main] | |
tags: ["v*"] # Push events to matching v*, i.e. v1.0, v20.15.10 | |
pull_request: {} | |
workflow_dispatch: | |
concurrency: | |
group: ${{ github.workflow }}-${{ github.ref }} | |
cancel-in-progress: true | |
jobs: | |
test: | |
name: ${{ matrix.platform }} py${{ matrix.python-version }} | |
runs-on: ${{ matrix.platform }} | |
strategy: | |
matrix: | |
platform: [ubuntu-latest, windows-latest, macos-latest] | |
python-version: ["3.10", "3.11"] | |
steps: | |
- uses: actions/checkout@v3 | |
- name: Set up Python ${{ matrix.python-version }} | |
uses: actions/setup-python@v4 | |
with: | |
python-version: ${{ matrix.python-version }} | |
# these libraries enable testing on Qt on linux and OpenGL on Windows | |
- uses: pyvista/setup-headless-display-action@v2 | |
with: | |
qt: true | |
# note: if you need dependencies from conda, considering using | |
# setup-miniconda: https://github.com/conda-incubator/setup-miniconda | |
- name: Install conda dependencies | |
uses: conda-incubator/setup-miniconda@v3 | |
with: | |
python-version: ${{ matrix.python-version }} | |
environment-file: conda_config.yml | |
channel-priority: true | |
- name: Install pip dependencies | |
shell: bash -el {0} # this is necessary to activate the conda env | |
run: | | |
pip install ".[testing]" | |
- name: Test with pytest | |
shell: bash -el {0} | |
run: | | |
pytest --color=yes --cov=motile-napari-plugin --cov-report=xml --cov-report=term-missing tests | |
- name: Coverage | |
uses: codecov/codecov-action@v4 | |
with: | |
token: ${{ secrets.CODECOV_TOKEN }} | |
slug: funkelab/motile-napari-plugin |