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A skeleton repository a Scala-based fgbio-like command-line toolkit.

Why this repo?

This the starting point for Fulcrum Genomics projects that contain Scala-based fgbio-like tools. Using this infrastructure, you can add quickly add your own tools to a stand-alone toolkit:

• add your own tools to tools/src/main/scala/com/client/tools (see ExampleTool.scala contained therein)

Building & Testing

This repo uses mill as it's build system.

To run unit tests:

./mill _.test

To build an executable JAR at ./jars/<FIXME>-tools.jar:

./mill _.deployLocal

To set up this project for IntelliJ, run:

mill mill.scalalib.GenIdea/idea