doc: add fulcrum genomics more prominently #99
Workflow file for this run
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| name: build wheels | |
| on: | |
| pull_request: | |
| workflow_call: | |
| inputs: | |
| skip: | |
| description: skip known long-running builds build (>10 minutes) | |
| required: false | |
| type: boolean | |
| default: true | |
| workflow_dispatch: | |
| inputs: | |
| skip: | |
| description: skip known long-running builds build (>10 minutes) | |
| required: false | |
| type: boolean | |
| default: true | |
| jobs: | |
| define-buildplat: | |
| name: Builds os-runner and platform tag matrix to build wheels | |
| runs-on: ubuntu-latest | |
| outputs: | |
| buildplat: ${{ steps.buildplat.outputs.buildplat }} | |
| steps: | |
| - name: Define the build platform (short-running builds) | |
| id: buildplat | |
| run: | | |
| if [[ "${{ github.event_name == 'pull_request' || inputs.skip }}" == "true" ]]; then | |
| echo 'buildplat=[["ubuntu-22.04", "manylinux_x86_64"], ["ubuntu-22.04", "musllinux_x86_64"], ["macos-13", "macosx_x86_64"], ["macos-15", "macosx_arm64"]]' >> "$GITHUB_OUTPUT" | |
| else | |
| echo 'buildplat=[["ubuntu-22.04", "manylinux_x86_64"], ["ubuntu-22.04", "musllinux_x86_64"], ["ubuntu-22.04", "manylinux_aarch64"], ["ubuntu-22.04", "musllinux_aarch64"], ["macos-13", "macosx_x86_64"], ["macos-15", "macosx_arm64"]]' >> "$GITHUB_OUTPUT" | |
| fi | |
| build-wheels: | |
| name: Build wheels for ${{ matrix.python-version }}-${{ matrix.buildplat[1] }} input-${{ inputs.skip }} | |
| runs-on: ${{ matrix.buildplat[0] }} | |
| needs: define-buildplat | |
| strategy: | |
| matrix: | |
| buildplat: ${{ fromJSON(needs.define-buildplat.outputs.buildplat) }} | |
| python-version: [cp39, cp310, cp311, cp312] | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| submodules: recursive | |
| - name: Set up QEMU | |
| if: runner.os == 'Linux' | |
| uses: docker/setup-qemu-action@v3 | |
| - name: Build wheels | |
| uses: pypa/[email protected] | |
| with: | |
| package-dir: . | |
| output-dir: wheelhouse | |
| config-file: "{package}/pyproject.toml" | |
| env: | |
| # select | |
| CIBW_BUILD: ${{ matrix.python-version }}-${{ matrix.buildplat[1] }} | |
| CIBW_BUILD_VERBOSITY: 1 | |
| # linux | |
| CIBW_MANYLINUX_X86_64_IMAGE: manylinux2014 | |
| # manylinux2014 can't build on aarch64 | |
| CIBW_MANYLINUX_AARCH64_IMAGE: manylinux_2_28 | |
| CIBW_MUSLLINUX_X86_64_IMAGE: musllinux_1_2 | |
| CIBW_MUSLLINUX_AARCH64_IMAGE: musllinux_1_2 | |
| CIBW_ARCHS_LINUX: auto64 aarch64 | |
| CIBW_BEFORE_BUILD_LINUX: "{project}/ci/linux-deps" | |
| CIBW_REPAIR_WHEEL_COMMAND_LINUX: 'LD_LIBRARY_PATH="$LD_LIBRARY_PATH:/usr/local/lib64" && auditwheel repair -w {dest_dir} {wheel}' | |
| # macos | |
| CIBW_ARCHS_MACOS: auto64 | |
| CIBW_BEFORE_BUILD_MACOS: "{project}/ci/osx-deps" | |
| CIBW_REPAIR_WHEEL_COMMAND_MACOS: "delocate-wheel --require-archs {delocate_archs} -w {dest_dir} -v {wheel}" | |
| CIBW_TEST_COMMAND: > | |
| if (cd ~/ && python -c "import pybwa") | |
| then | |
| echo "Import pybwa: OK" | |
| else | |
| exit 1 | |
| fi | |
| - uses: actions/upload-artifact@v4 | |
| with: | |
| name: pybwa-${{ matrix.python-version }}-${{ matrix.buildplat[1] }} | |
| path: ./wheelhouse/*.whl | |
| if-no-files-found: error |