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doc: Clarify that multiple output types may be specified #42

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Apr 25, 2024
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doc: Clarify that multiple output types may be specified #42

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2 changes: 2 additions & 0 deletions README.md
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Expand Up @@ -114,6 +114,8 @@ Options:
The read structure types to write to their own files (Must be one of T, B,
or M for template reads, sample barcode reads, and molecular barcode reads)

Multiple output types may be specified as a space-delimited list.

[default: T]

-s, --sample-metadata <SAMPLE_METADATA>
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2 changes: 2 additions & 0 deletions src/bin/commands/demux.rs
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Expand Up @@ -580,6 +580,8 @@ pub(crate) struct Demux {

/// The read structure types to write to their own files (Must be one of T, B, or M for
/// template reads, sample barcode reads, and molecular barcode reads).
///
/// Multiple output types may be specified as a space-delimited list.
#[clap(long, short='b', default_value="T", num_args = 1.. )]
output_types: Vec<char>,

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