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fulcrumgenomics / fgbio Public

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GroupReadsByUmi may fail when marking duplicates including secondary/supplementary reads#964

Draft

nh13 wants to merge 3 commits intomainfulcrumgenomics/fgbio:mainfrom nh_markdup_order_issuefulcrumgenomics/fgbio:nh_markdup_order_issueCopy head branch name to clipboard

+165-26

Conversation Commits3 (3)Checks Files changed

Commits

Commits on Jan 31, 2024

add a test to show issue with SamOrder#
nh13
committed
commit to show how GroupReadsByUmi fails
nh13
committed
fix: properly template-coordinate sort and duplicate mark secondary and supplementary reads
nh13
committed

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