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Overview

Requirements

Startup

  • Go to the nifi-docker folder
  • Start and build the Container using docker compose:
    • docker compose up --build
  • Wait until the application has started
  • The Nifi Web-Interface including the data-flow at: https://localhost:8443/nifi
    • login data:
      • user: admin
      • pw: test12345678
  • For the conversion you first have to start the existing Nifi Controller services

Stopping container

  • stop container: ctrl+c (docker compose down)

Other Info

  • all data is persisted in local folder ./data/
  • Files can be shared via the shared_folder between the container and your machine

Trouble shooting

  • if container does not start (warning: this might delete component configuration!):

    1. stop container: ctrl+c, docker compose down -v

    2. remove current configuration: rm data/conf/* -rf

    3. copy ./backup/conf to ./data/conf: cp ./backup/conf/* ./data/conf/ -rf

    4. docker compose up --force-recreate --build

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Automated ETL pipeline for clinical study data

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