Skip to content

Commit

Permalink
deploy: 88d5159
Browse files Browse the repository at this point in the history
  • Loading branch information
mayalenE committed May 27, 2024
0 parents commit 69e040c
Show file tree
Hide file tree
Showing 209 changed files with 622,169 additions and 0 deletions.
4 changes: 4 additions & 0 deletions .buildinfo
Original file line number Diff line number Diff line change
@@ -0,0 +1,4 @@
# Sphinx build info version 1
# This file hashes the configuration used when building these files. When it is not found, a full rebuild will be done.
config: 2bded3c671bf1ccee764013e392040d0
tags: 645f666f9bcd5a90fca523b33c5a78b7
Empty file added .nojekyll
Empty file.
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
375 changes: 375 additions & 0 deletions _modules/index.html
Original file line number Diff line number Diff line change
@@ -0,0 +1,375 @@

<!DOCTYPE html>


<html lang="en" data-content_root="../" >

<head>
<meta charset="utf-8" />
<meta name="viewport" content="width=device-width, initial-scale=1.0" />
<title>Overview: module code &#8212; sbmltoodejax</title>



<script data-cfasync="false">
document.documentElement.dataset.mode = localStorage.getItem("mode") || "";
document.documentElement.dataset.theme = localStorage.getItem("theme") || "light";
</script>

<!-- Loaded before other Sphinx assets -->
<link href="../_static/styles/theme.css?digest=8d27b9dea8ad943066ae" rel="stylesheet" />
<link href="../_static/styles/bootstrap.css?digest=8d27b9dea8ad943066ae" rel="stylesheet" />
<link href="../_static/styles/pydata-sphinx-theme.css?digest=8d27b9dea8ad943066ae" rel="stylesheet" />


<link href="../_static/vendor/fontawesome/6.5.1/css/all.min.css?digest=8d27b9dea8ad943066ae" rel="stylesheet" />
<link rel="preload" as="font" type="font/woff2" crossorigin href="../_static/vendor/fontawesome/6.5.1/webfonts/fa-solid-900.woff2" />
<link rel="preload" as="font" type="font/woff2" crossorigin href="../_static/vendor/fontawesome/6.5.1/webfonts/fa-brands-400.woff2" />
<link rel="preload" as="font" type="font/woff2" crossorigin href="../_static/vendor/fontawesome/6.5.1/webfonts/fa-regular-400.woff2" />

<link rel="stylesheet" type="text/css" href="../_static/pygments.css?v=a746c00c" />
<link rel="stylesheet" type="text/css" href="../_static/styles/sphinx-book-theme.css?v=384b581d" />
<link rel="stylesheet" type="text/css" href="../_static/mystnb.4510f1fc1dee50b3e5859aac5469c37c29e427902b24a333a5f9fcb2f0b3ac41.css" />

<!-- Pre-loaded scripts that we'll load fully later -->
<link rel="preload" as="script" href="../_static/scripts/bootstrap.js?digest=8d27b9dea8ad943066ae" />
<link rel="preload" as="script" href="../_static/scripts/pydata-sphinx-theme.js?digest=8d27b9dea8ad943066ae" />
<script src="../_static/vendor/fontawesome/6.5.1/js/all.min.js?digest=8d27b9dea8ad943066ae"></script>

<script src="../_static/documentation_options.js?v=b4bb93ae"></script>
<script src="../_static/doctools.js?v=9a2dae69"></script>
<script src="../_static/sphinx_highlight.js?v=dc90522c"></script>
<script src="../_static/scripts/sphinx-book-theme.js?v=efea14e4"></script>
<script>DOCUMENTATION_OPTIONS.pagename = '_modules/index';</script>
<link rel="canonical" href="https://developmentalsystems.org/sbmltoodejax/_modules/index.html" />
<link rel="icon" href="../_static/logo.svg"/>
<link rel="index" title="Index" href="../genindex.html" />
<link rel="search" title="Search" href="../search.html" />
<meta name="viewport" content="width=device-width, initial-scale=1"/>
<meta name="docsearch:language" content="en"/>
</head>


<body data-bs-spy="scroll" data-bs-target=".bd-toc-nav" data-offset="180" data-bs-root-margin="0px 0px -60%" data-default-mode="">



<a id="pst-skip-link" class="skip-link" href="#main-content">Skip to main content</a>

<div id="pst-scroll-pixel-helper"></div>

<button type="button" class="btn rounded-pill" id="pst-back-to-top">
<i class="fa-solid fa-arrow-up"></i>
Back to top
</button>


<input type="checkbox"
class="sidebar-toggle"
name="__primary"
id="__primary"/>
<label class="overlay overlay-primary" for="__primary"></label>

<input type="checkbox"
class="sidebar-toggle"
name="__secondary"
id="__secondary"/>
<label class="overlay overlay-secondary" for="__secondary"></label>

<div class="search-button__wrapper">
<div class="search-button__overlay"></div>
<div class="search-button__search-container">
<form class="bd-search d-flex align-items-center"
action="../search.html"
method="get">
<i class="fa-solid fa-magnifying-glass"></i>
<input type="search"
class="form-control"
name="q"
id="search-input"
placeholder="Search..."
aria-label="Search..."
autocomplete="off"
autocorrect="off"
autocapitalize="off"
spellcheck="false"/>
<span class="search-button__kbd-shortcut"><kbd class="kbd-shortcut__modifier">Ctrl</kbd>+<kbd>K</kbd></span>
</form></div>
</div>

<header class="bd-header navbar navbar-expand-lg bd-navbar">
</header>


<div class="bd-container">
<div class="bd-container__inner bd-page-width">





<div class="bd-sidebar-primary bd-sidebar">



<div class="sidebar-header-items sidebar-primary__section">




</div>

<div class="sidebar-primary-items__start sidebar-primary__section">
<div class="sidebar-primary-item">



<a class="navbar-brand logo" href="../index.html">










<img src="../_static/logo.svg" class="logo__image only-light" alt="sbmltoodejax - Home"/>
<script>document.write(`<img src="../_static/logo.svg" class="logo__image only-dark" alt="sbmltoodejax - Home"/>`);</script>


</a></div>
<div class="sidebar-primary-item">

<script>
document.write(`
<button class="btn navbar-btn search-button-field search-button__button" title="Search" aria-label="Search" data-bs-placement="bottom" data-bs-toggle="tooltip">
<i class="fa-solid fa-magnifying-glass"></i>
<span class="search-button__default-text">Search</span>
<span class="search-button__kbd-shortcut"><kbd class="kbd-shortcut__modifier">Ctrl</kbd>+<kbd class="kbd-shortcut__modifier">K</kbd></span>
</button>
`);
</script></div>
<div class="sidebar-primary-item"><nav class="bd-links bd-docs-nav" aria-label="Main">
<div class="bd-toc-item navbar-nav active">
<p aria-level="2" class="caption" role="heading"><span class="caption-text">SBMLtoODEjax</span></p>
<ul class="nav bd-sidenav">
<li class="toctree-l1"><a class="reference internal" href="../index.html">🏡 Home</a></li>
</ul>
<p aria-level="2" class="caption" role="heading"><span class="caption-text">Getting Started</span></p>
<ul class="nav bd-sidenav">
<li class="toctree-l1"><a class="reference internal" href="../installation.html">🛠️ Installation</a></li>
<li class="toctree-l1"><a class="reference internal" href="../why_use.html">👀 Why SBMLtoODEjax?</a></li>
<li class="toctree-l1"><a class="reference internal" href="../design_principles.html">🎨 Design Principles</a></li>
<li class="toctree-l1"><a class="reference internal" href="../contributing.html">🤝 Contributing</a></li>
<li class="toctree-l1"><a class="reference internal" href="../jax101.html">📎 Jax 101 [external]</a></li>
</ul>
<p aria-level="2" class="caption" role="heading"><span class="caption-text">🎓 Tutorials</span></p>
<ul class="nav bd-sidenav">
<li class="toctree-l1"><a class="reference internal" href="../tutorials/biomodels_curation.html">Numerical simulation</a></li>
<li class="toctree-l1"><a class="reference internal" href="../tutorials/parallel_execution.html">Parallel execution</a></li>
<li class="toctree-l1"><a class="reference internal" href="../tutorials/benchmark.html">Benchmarking</a></li>
<li class="toctree-l1"><a class="reference internal" href="../tutorials/gradient_descent.html">Gradient descent</a></li>
</ul>
<p aria-level="2" class="caption" role="heading"><span class="caption-text">Public API - sbmltoodejax package</span></p>
<ul class="nav bd-sidenav">
<li class="toctree-l1"><a class="reference internal" href="../api/parse.html"><code class="docutils literal notranslate"><span class="pre">sbmltoodejax.parse</span></code></a></li>
<li class="toctree-l1"><a class="reference internal" href="../api/modulegeneration.html"><code class="docutils literal notranslate"><span class="pre">sbmltoodejax.modulegeneration</span></code></a></li>
<li class="toctree-l1"><a class="reference internal" href="../api/jaxfuncs.html"><code class="docutils literal notranslate"><span class="pre">sbmltoodejax.jaxfuncs</span></code></a></li>
<li class="toctree-l1"><a class="reference internal" href="../api/biomodels_api.html"><code class="docutils literal notranslate"><span class="pre">sbmltoodejax.biomodels_api</span></code></a></li>
<li class="toctree-l1"><a class="reference internal" href="../api/utils.html"><code class="docutils literal notranslate"><span class="pre">sbmltoodejax.utils</span></code></a></li>
</ul>

</div>
</nav></div>
</div>


<div class="sidebar-primary-items__end sidebar-primary__section">
</div>

<div id="rtd-footer-container"></div>


</div>

<main id="main-content" class="bd-main">



<div class="sbt-scroll-pixel-helper"></div>

<div class="bd-content">
<div class="bd-article-container">

<div class="bd-header-article">
<div class="header-article-items header-article__inner">

<div class="header-article-items__start">

<div class="header-article-item"><label class="sidebar-toggle primary-toggle btn btn-sm" for="__primary" title="Toggle primary sidebar" data-bs-placement="bottom" data-bs-toggle="tooltip">
<span class="fa-solid fa-bars"></span>
</label></div>

</div>


<div class="header-article-items__end">

<div class="header-article-item">

<div class="article-header-buttons">


<a href="https://github.com/flowersteam/sbmltoodejax" target="_blank"
class="btn btn-sm btn-source-repository-button"
title="Source repository"
data-bs-placement="bottom" data-bs-toggle="tooltip"
>


<span class="btn__icon-container">
<i class="fab fa-github"></i>
</span>

</a>




<button onclick="toggleFullScreen()"
class="btn btn-sm btn-fullscreen-button"
title="Fullscreen mode"
data-bs-placement="bottom" data-bs-toggle="tooltip"
>


<span class="btn__icon-container">
<i class="fas fa-expand"></i>
</span>

</button>



<script>
document.write(`
<button class="btn btn-sm navbar-btn theme-switch-button" title="light/dark" aria-label="light/dark" data-bs-placement="bottom" data-bs-toggle="tooltip">
<span class="theme-switch nav-link" data-mode="light"><i class="fa-solid fa-sun fa-lg"></i></span>
<span class="theme-switch nav-link" data-mode="dark"><i class="fa-solid fa-moon fa-lg"></i></span>
<span class="theme-switch nav-link" data-mode="auto"><i class="fa-solid fa-circle-half-stroke fa-lg"></i></span>
</button>
`);
</script>


<script>
document.write(`
<button class="btn btn-sm navbar-btn search-button search-button__button" title="Search" aria-label="Search" data-bs-placement="bottom" data-bs-toggle="tooltip">
<i class="fa-solid fa-magnifying-glass fa-lg"></i>
</button>
`);
</script>

</div></div>

</div>

</div>
</div>



<div id="jb-print-docs-body" class="onlyprint">
<h1></h1>
<!-- Table of contents -->
<div id="print-main-content">
<div id="jb-print-toc">

</div>
</div>
</div>



<div id="searchbox"></div>
<article class="bd-article">

<h1>All modules for which code is available</h1>
<ul><li><a href="sbmltoodejax/biomodels_api.html">sbmltoodejax.biomodels_api</a></li>
<li><a href="sbmltoodejax/jaxfuncs.html">sbmltoodejax.jaxfuncs</a></li>
<li><a href="sbmltoodejax/modulegeneration.html">sbmltoodejax.modulegeneration</a></li>
<li><a href="sbmltoodejax/parse.html">sbmltoodejax.parse</a></li>
<li><a href="sbmltoodejax/utils.html">sbmltoodejax.utils</a></li>
</ul>

</article>






<footer class="prev-next-footer">

<div class="prev-next-area">
</div>
</footer>

</div>



<div class="bd-sidebar-secondary bd-toc"></div>


</div>
<footer class="bd-footer-content">

<div class="bd-footer-content__inner container">

<div class="footer-item">

<p class="component-author">
By Mayalen Etcheverry
</p>

</div>

<div class="footer-item">


<p class="copyright">

© Copyright 2023, Mayalen Etcheverry.
<br/>

</p>

</div>

<div class="footer-item">

</div>

<div class="footer-item">

</div>

</div>
</footer>


</main>
</div>
</div>

<!-- Scripts loaded after <body> so the DOM is not blocked -->
<script src="../_static/scripts/bootstrap.js?digest=8d27b9dea8ad943066ae"></script>
<script src="../_static/scripts/pydata-sphinx-theme.js?digest=8d27b9dea8ad943066ae"></script>

<footer class="bd-footer">
</footer>
</body>
</html>
Loading

0 comments on commit 69e040c

Please sign in to comment.