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  1. CaImAn CaImAn Public

    Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.

    Python 635 369

  2. DeepFRI DeepFRI Public

    Deep functional residue identification

    Python 303 75

  3. finufft finufft Public

    Non-uniform fast Fourier transform library of types 1,2,3 in dimensions 1,2,3

    C++ 294 76

  4. CaImAn-MATLAB CaImAn-MATLAB Public

    Complete Matlab pipeline for large scale calcium imaging data analysis

    MATLAB 252 147

  5. NoRMCorre NoRMCorre Public

    Matlab routines for online non-rigid motion correction of calcium imaging data

    MATLAB 142 88

  6. deepblast deepblast Public

    Neural Networks for Protein Sequence Alignment

    Python 113 20

Repositories

Showing 10 of 178 repositories
  • nixpack Public

    nix+spack = nixpack (spanix?)

    flatironinstitute/nixpack’s past year of commit activity
    Python 38 MIT 4 1 4 Updated Oct 27, 2024
  • nemos Public

    NEural MOdelS, a statistical modeling framework for neuroscience.

    flatironinstitute/nemos’s past year of commit activity
    Python 79 MIT 7 83 7 Updated Oct 27, 2024
  • neurosift Public

    Browser-based NWB visualization and DANDI exploration

    flatironinstitute/neurosift’s past year of commit activity
    TypeScript 44 Apache-2.0 6 51 1 Updated Oct 26, 2024
  • finufft Public

    Non-uniform fast Fourier transform library of types 1,2,3 in dimensions 1,2,3

    flatironinstitute/finufft’s past year of commit activity
    C++ 294 76 54 (3 issues need help) 7 Updated Oct 25, 2024
  • CryoLike Public
    flatironinstitute/CryoLike’s past year of commit activity
    Python 4 MIT 0 0 0 Updated Oct 25, 2024
  • spack Public Forked from spack/spack

    A flexible package manager that supports multiple versions, configurations, platforms, and compilers.

    flatironinstitute/spack’s past year of commit activity
    Python 2 2,301 0 13 Updated Oct 24, 2024
  • sciware Public

    Learning materials for scientific software development

    flatironinstitute/sciware’s past year of commit activity
    HTML 78 34 2 0 Updated Oct 24, 2024
  • FlatironMDCourse Public

    Flatiron Institute MD Course

    flatironinstitute/FlatironMDCourse’s past year of commit activity
    Jupyter Notebook 6 MIT 0 0 0 Updated Oct 23, 2024
  • clair Public

    Clair (Clang Introspection and Reflection) tools. A set of clang tools developed for Flatiron/CCQ

    flatironinstitute/clair’s past year of commit activity
    C++ 10 Apache-2.0 1 3 0 Updated Oct 23, 2024
  • PyBenchFramework Public

    BenchmarkToolkit is a Python library designed to simplify and streamline benchmarking tasks. This library provides a high-level abstraction over various benchmarking functions, allowing developers to easily perform performance testing and analysis with minimal setup.

    flatironinstitute/PyBenchFramework’s past year of commit activity
    Python 0 0 0 0 Updated Oct 23, 2024
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