Bump the action-packages group across 1 directory with 6 updates (#349)

* Bump the action-packages group across 1 directory with 6 updates

Bumps the action-packages group with 6 updates in the / directory:

| Package | From | To |
| --- | --- | --- |
| [mikefarah/yq](https://github.com/mikefarah/yq) | `4.44.2` | `4.45.1` |
| [step-security/harden-runner](https://github.com/step-security/harden-runner) | `2.9.0` | `2.10.4` |
| [actions/dependency-review-action](https://github.com/actions/dependency-review-action) | `4.3.4` | `4.5.0` |
| [actions/setup-python](https://github.com/actions/setup-python) | `5.1.1` | `5.3.0` |
| [actions/upload-artifact](https://github.com/actions/upload-artifact) | `4.3.4` | `4.6.0` |
| [codecov/codecov-action](https://github.com/codecov/codecov-action) | `4.5.0` | `5.1.2` |



Updates `mikefarah/yq` from 4.44.2 to 4.45.1
- [Release notes](https://github.com/mikefarah/yq/releases)
- [Changelog](https://github.com/mikefarah/yq/blob/master/release_notes.txt)
- [Commits](mikefarah/yq@v4.44.2...v4.45.1)

Updates `step-security/harden-runner` from 2.9.0 to 2.10.4
- [Release notes](https://github.com/step-security/harden-runner/releases)
- [Commits](step-security/harden-runner@0d38121...cb605e5)

Updates `actions/dependency-review-action` from 4.3.4 to 4.5.0
- [Release notes](https://github.com/actions/dependency-review-action/releases)
- [Commits](actions/dependency-review-action@5a2ce3f...3b139cf)

Updates `actions/setup-python` from 5.1.1 to 5.3.0
- [Release notes](https://github.com/actions/setup-python/releases)
- [Commits](actions/setup-python@39cd149...0b93645)

Updates `actions/upload-artifact` from 4.3.4 to 4.6.0
- [Release notes](https://github.com/actions/upload-artifact/releases)
- [Commits](actions/upload-artifact@0b2256b...65c4c4a)

Updates `codecov/codecov-action` from 4.5.0 to 5.1.2
- [Release notes](https://github.com/codecov/codecov-action/releases)
- [Changelog](https://github.com/codecov/codecov-action/blob/main/CHANGELOG.md)
- [Commits](codecov/codecov-action@e28ff12...1e68e06)

---
updated-dependencies:
- dependency-name: mikefarah/yq
  dependency-type: direct:production
  update-type: version-update:semver-minor
  dependency-group: action-packages
- dependency-name: step-security/harden-runner
  dependency-type: direct:production
  update-type: version-update:semver-minor
  dependency-group: action-packages
- dependency-name: actions/dependency-review-action
  dependency-type: direct:production
  update-type: version-update:semver-minor
  dependency-group: action-packages
- dependency-name: actions/setup-python
  dependency-type: direct:production
  update-type: version-update:semver-minor
  dependency-group: action-packages
- dependency-name: actions/upload-artifact
  dependency-type: direct:production
  update-type: version-update:semver-minor
  dependency-group: action-packages
- dependency-name: codecov/codecov-action
  dependency-type: direct:production
  update-type: version-update:semver-major
  dependency-group: action-packages
...

Signed-off-by: dependabot[bot] <[email protected]>

* Update type hint

---------

Signed-off-by: dependabot[bot] <[email protected]>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: Keiran Price <[email protected]>

.github/workflows/build-and-push.yml

@@ -43,7 +43,7 @@ jobs:
           token: ${{ secrets.GITOPS_STAGING_EDIT_TOKEN }}
 
       - name: Edit the YAML rundetection file for staging
-        uses: mikefarah/yq@v4.44.2
+        uses: mikefarah/yq@v4.45.1
         with:
           cmd: yq e -i '.spec.template.spec.containers[] |= select(.name == "rundetection").image = "ghcr.io/fiaisis/rundetection@${{ steps.docker_build.outputs.digest }}"' './components/rundetection/envs/staging/rundetection.yml'
 

.github/workflows/dependency-review.yml

@@ -15,10 +15,10 @@ jobs:
     runs-on: ubuntu-latest
     steps:
       - name: Harden Runner
-        uses: step-security/harden-runner@0d381219ddf674d61a7572ddd19d7941e271515c # v2.9.0
+        uses: step-security/harden-runner@cb605e52c26070c328afc4562f0b4ada7618a84e # v2.10.4
         with:
           egress-policy: audit
       - name: 'Checkout Repository'
         uses: actions/checkout@692973e3d937129bcbf40652eb9f2f61becf3332 # v4.1.7
       - name: 'Dependency Review'
-        uses: actions/dependency-review-action@5a2ce3f5b92ee19cbb1541a4984c76d921601d7c # v4.3.4
+        uses: actions/dependency-review-action@3b139cfc5fae8b618d3eae3675e383bb1769c019 # v4.5.0

.github/workflows/formatting_and_linting.yml

@@ -16,7 +16,7 @@ jobs:
         uses: actions/checkout@692973e3d937129bcbf40652eb9f2f61becf3332 # v4.1.7
 
       - name: Set up Python
-        uses: actions/setup-python@39cd14951b08e74b54015e9e001cdefcf80e669f # v5.1.1
+        uses: actions/setup-python@0b93645e9fea7318ecaed2b359559ac225c90a2b # v5.3.0
         with:
           python-version: '3.12'
 

.github/workflows/scorecard.yml

@@ -35,7 +35,7 @@ jobs:
           publish_results: true
 
       - name: "Upload artifact"
-        uses: actions/upload-artifact@0b2256b8c012f0828dc542b3febcab082c67f72b # v4.3.4
+        uses: actions/upload-artifact@65c4c4a1ddee5b72f698fdd19549f0f0fb45cf08 # v4.6.0
         with:
           name: SARIF file
           path: results.sarif

.github/workflows/tests.yml

@@ -12,7 +12,7 @@ jobs:
         uses: actions/checkout@692973e3d937129bcbf40652eb9f2f61becf3332 # v4.1.7
 
       - name: Set up python
-        uses: actions/setup-python@39cd14951b08e74b54015e9e001cdefcf80e669f # v5.1.1
+        uses: actions/setup-python@0b93645e9fea7318ecaed2b359559ac225c90a2b # v5.3.0
         with:
           python-version: '3.12'
 
@@ -33,7 +33,7 @@ jobs:
         run: pytest . --random-order --random-order-bucket=global --ignore test/test_e2e.py --cov --cov-report=xml
 
       - name: Upload coverage
-        uses: codecov/codecov-action@e28ff129e5465c2c0dcc6f003fc735cb6ae0c673 # v4.5.0
+        uses: codecov/codecov-action@1e68e06f1dbfde0e4cefc87efeba9e4643565303 # v5.1.2
         with:
           token: ${{ secrets.CODECOV_TOKEN }}
 
@@ -45,7 +45,7 @@ jobs:
         uses: actions/checkout@692973e3d937129bcbf40652eb9f2f61becf3332 # v4.1.7
 
       - name: Set up python
-        uses: actions/setup-python@39cd14951b08e74b54015e9e001cdefcf80e669f # v5.1.1
+        uses: actions/setup-python@0b93645e9fea7318ecaed2b359559ac225c90a2b # v5.3.0
         with:
           python-version: '3.12'
 

rundetection/rules/loq_rules.py

@@ -129,7 +129,7 @@ def _set_transmission_file(job_request: JobRequest, sample_title: str, sans_file
         job_request.additional_values["scatter_transmission"] = trans_run_number
 
 
-def _set_can_files(can_title: str, job_request: JobRequest, sans_files: list[SansFileData]) -> None:
+def _set_can_files(can_title: str | None, job_request: JobRequest, sans_files: list[SansFileData]) -> None:
     if can_title is not None:
         can_scatter = _find_can_scatter_file(sans_files=sans_files, can_title=can_title)
         logger.info("LOQ can scatter found %s", can_scatter)