Apply clang format style changes (idaholab#28929)

farscape-project · Oct 24, 2024 · 1773e9d · 1773e9d
1 parent 9868bf1
commit 1773e9d
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Showing 8 changed files with 64 additions and 34 deletions.
diff --git a/framework/src/outputs/PetscOutput.C b/framework/src/outputs/PetscOutput.C
@@ -244,8 +244,10 @@ PetscOutput::solveSetup()
   // get an updated nonlinear iteration number)
   // Not every Output should register its own DM monitor! Just register one each of nonlinear
   // and linear and dispatch all Outputs from there!
-  LibmeshPetscCallA(_communicator.get(), SNESMonitorSet(snes, petscNonlinearOutput, this, LIBMESH_PETSC_NULLPTR));
-  LibmeshPetscCallA(_communicator.get(), KSPMonitorSet(ksp, petscLinearOutput, this, LIBMESH_PETSC_NULLPTR));
+  LibmeshPetscCallA(_communicator.get(),
+                    SNESMonitorSet(snes, petscNonlinearOutput, this, LIBMESH_PETSC_NULLPTR));
+  LibmeshPetscCallA(_communicator.get(),
+                    KSPMonitorSet(ksp, petscLinearOutput, this, LIBMESH_PETSC_NULLPTR));
 }
 
 Real

diff --git a/framework/src/partitioner/PetscExternalPartitioner.C b/framework/src/partitioner/PetscExternalPartitioner.C
@@ -250,7 +250,9 @@ PetscExternalPartitioner::partitionGraph(const Parallel::Communicator & comm,
       values[i++] = weight;
   }
 
-  LibmeshPetscCallA(comm.get(), MatCreateMPIAdj(comm.get(), num_local_elems, num_elems, xadj, adjncy, values, &dual));
+  LibmeshPetscCallA(
+      comm.get(),
+      MatCreateMPIAdj(comm.get(), num_local_elems, num_elems, xadj, adjncy, values, &dual));
 
   LibmeshPetscCallA(comm.get(), MatPartitioningCreate(comm.get(), &part));
 #if !PETSC_VERSION_LESS_THAN(3, 12, 3)
@@ -289,7 +291,8 @@ PetscExternalPartitioner::partitionGraph(const Parallel::Communicator & comm,
 #endif
   LibmeshPetscCallA(comm.get(), MatPartitioningSetType(part, part_package.c_str()));
   if (part_package == "hierarch")
-    LibmeshPetscCallA(comm.get(), MatPartitioningHierarchicalSetNfineparts(part, num_parts_per_compute_node));
+    LibmeshPetscCallA(comm.get(),
+                      MatPartitioningHierarchicalSetNfineparts(part, num_parts_per_compute_node));
 
   LibmeshPetscCallA(comm.get(), MatPartitioningSetFromOptions(part));
   LibmeshPetscCallA(comm.get(), MatPartitioningApply(part, &is));

diff --git a/framework/src/systems/NonlinearSystem.C b/framework/src/systems/NonlinearSystem.C
@@ -316,20 +316,23 @@ NonlinearSystem::setupColoringFiniteDifferencedPreconditioner()
   LibmeshPetscCallA(_communicator.get(), MatColoringApply(matcoloring, &iscoloring));
   LibmeshPetscCallA(_communicator.get(), MatColoringDestroy(&matcoloring));
 
-  LibmeshPetscCallA(_communicator.get(), MatFDColoringCreate(petsc_mat->mat(), iscoloring, &_fdcoloring));
+  LibmeshPetscCallA(_communicator.get(),
+                    MatFDColoringCreate(petsc_mat->mat(), iscoloring, &_fdcoloring));
   LibmeshPetscCallA(_communicator.get(), MatFDColoringSetFromOptions(_fdcoloring));
   // clang-format off
   LibmeshPetscCallA(_communicator.get(), MatFDColoringSetFunction(_fdcoloring,
                                                                   (PetscErrorCode(*)(void))(void (*)(void)) &
                                                                       libMesh::libmesh_petsc_snes_fd_residual,
                                                                   &petsc_nonlinear_solver));
   // clang-format on
-  LibmeshPetscCallA(_communicator.get(), MatFDColoringSetUp(petsc_mat->mat(), iscoloring, _fdcoloring));
-  LibmeshPetscCallA(_communicator.get(), SNESSetJacobian(petsc_nonlinear_solver.snes(),
-                                                         petsc_mat->mat(),
-                                                         petsc_mat->mat(),
-                                                         SNESComputeJacobianDefaultColor,
-                                                         _fdcoloring));
+  LibmeshPetscCallA(_communicator.get(),
+                    MatFDColoringSetUp(petsc_mat->mat(), iscoloring, _fdcoloring));
+  LibmeshPetscCallA(_communicator.get(),
+                    SNESSetJacobian(petsc_nonlinear_solver.snes(),
+                                    petsc_mat->mat(),
+                                    petsc_mat->mat(),
+                                    SNESComputeJacobianDefaultColor,
+                                    _fdcoloring));
   // PETSc >=3.3.0
   LibmeshPetscCallA(_communicator.get(), ISColoringDestroy(&iscoloring));
 }

diff --git a/framework/src/utils/PetscDMMoose.C b/framework/src/utils/PetscDMMoose.C
@@ -803,7 +803,8 @@ DMMooseGetEmbedding_Private(DM dm, IS * embedding)
 
       LibmeshPetscCallQ(DMCreateGlobalVector(dm, &v));
       LibmeshPetscCallQ(VecGetOwnershipRange(v, &low, &high));
-      LibmeshPetscCallQ(ISCreateStride(((PetscObject)dm)->comm, (high - low), low, 1, &dmm->_embedding));
+      LibmeshPetscCallQ(
+          ISCreateStride(((PetscObject)dm)->comm, (high - low), low, 1, &dmm->_embedding));
     }
   }
   LibmeshPetscCallQ(PetscObjectReference((PetscObject)(dmm->_embedding)));
@@ -840,7 +841,8 @@ DMCreateFieldDecomposition_Moose(
     if (!dinfo._dm)
     {
       LibmeshPetscCallQ(DMCreateMoose(((PetscObject)dm)->comm, *dmm->_nl, dname, &dinfo._dm));
-      LibmeshPetscCallQ(PetscObjectSetOptionsPrefix((PetscObject)dinfo._dm, ((PetscObject)dm)->prefix));
+      LibmeshPetscCallQ(
+          PetscObjectSetOptionsPrefix((PetscObject)dinfo._dm, ((PetscObject)dm)->prefix));
       std::string suffix = std::string("fieldsplit_") + dname + "_";
       LibmeshPetscCallQ(PetscObjectAppendOptionsPrefix((PetscObject)dinfo._dm, suffix.c_str()));
       LibmeshPetscCallQ(DMMooseSetParentDM(dinfo._dm, dmm));
@@ -1225,7 +1227,8 @@ DMView_Moose(DM dm, PetscViewer viewer)
   {
     LibmeshPetscCallQ(PetscObjectGetName((PetscObject)dm, &name));
     LibmeshPetscCallQ(PetscObjectGetOptionsPrefix((PetscObject)dm, &prefix));
-    LibmeshPetscCallQ(PetscViewerASCIIPrintf(viewer, "DM Moose with name %s and prefix %s\n", name, prefix));
+    LibmeshPetscCallQ(
+        PetscViewerASCIIPrintf(viewer, "DM Moose with name %s and prefix %s\n", name, prefix));
     LibmeshPetscCallQ(PetscViewerASCIIPrintf(viewer, "variables:"));
     for (const auto & vit : *(dmm->_var_ids))
     {
@@ -1244,7 +1247,8 @@ DMView_Moose(DM dm, PetscViewer viewer)
       LibmeshPetscCallQ(PetscViewerASCIIPrintf(viewer, "sides:"));
       for (const auto & sit : *(dmm->_side_ids))
       {
-        LibmeshPetscCallQ(PetscViewerASCIIPrintf(viewer, "(%s,%d) ", sit.first.c_str(), sit.second));
+        LibmeshPetscCallQ(
+            PetscViewerASCIIPrintf(viewer, "(%s,%d) ", sit.first.c_str(), sit.second));
       }
       LibmeshPetscCallQ(PetscViewerASCIIPrintf(viewer, "\n"));
     }
@@ -1254,7 +1258,8 @@ DMView_Moose(DM dm, PetscViewer viewer)
       LibmeshPetscCallQ(PetscViewerASCIIPrintf(viewer, "unsides:"));
       for (const auto & sit : *(dmm->_unside_ids))
       {
-        LibmeshPetscCallQ(PetscViewerASCIIPrintf(viewer, "(%s,%d) ", sit.first.c_str(), sit.second));
+        LibmeshPetscCallQ(
+            PetscViewerASCIIPrintf(viewer, "(%s,%d) ", sit.first.c_str(), sit.second));
       }
       LibmeshPetscCallQ(PetscViewerASCIIPrintf(viewer, "\n"));
     }
@@ -1976,8 +1981,8 @@ DMSetFromOptions_Moose(PetscOptions * /*options*/, DM dm) // >= 3.6.0
                                      &dmm->_print_embedding,
                                      LIBMESH_PETSC_NULLPTR));
   PetscOptionsEnd();
-  LibmeshPetscCallQ(DMSetUp_Moose_Pre(dm)); /* Need some preliminary set up because, strangely enough, DMView() is called in
-                    DMSetFromOptions(). */
+  LibmeshPetscCallQ(DMSetUp_Moose_Pre(dm)); /* Need some preliminary set up because, strangely
+                    enough, DMView() is called in DMSetFromOptions(). */
   PetscFunctionReturn(PETSC_SUCCESS);
 }
 

diff --git a/framework/src/utils/PetscSupport.C b/framework/src/utils/PetscSupport.C
@@ -301,7 +301,8 @@ petscNonlinearConverged(SNES snes,
   PetscInt maxf = 0;   // maximum number of function evaluations
 
   // Ask the SNES object about its tolerances.
-  LibmeshPetscCallA(problem.comm().get(), SNESGetTolerances(snes, &atol, &rtol, &stol, &maxit, &maxf));
+  LibmeshPetscCallA(problem.comm().get(),
+                    SNESGetTolerances(snes, &atol, &rtol, &stol, &maxit, &maxf));
 
   // Ask the SNES object about its divergence tolerance.
   PetscReal divtol = 0.; // relative divergence tolerance
@@ -452,7 +453,8 @@ petscSetDefaultKSPNormType(FEProblemBase & problem, KSP ksp)
   for (const auto i : make_range(problem.numSolverSystems()))
   {
     SolverSystem & sys = problem.getSolverSystem(i);
-    LibmeshPetscCallA(problem.comm().get(), KSPSetNormType(ksp, getPetscKSPNormType(sys.getMooseKSPNormType())));
+    LibmeshPetscCallA(problem.comm().get(),
+                      KSPSetNormType(ksp, getPetscKSPNormType(sys.getMooseKSPNormType())));
   }
 }
 
@@ -524,7 +526,9 @@ petscSetDefaults(FEProblemBase & problem)
     // we use the default context provided by PETSc in addition to
     // a few other tests.
     {
-      LibmeshPetscCallA(nl.comm().get(), SNESSetConvergenceTest(snes, petscNonlinearConverged, &problem, LIBMESH_PETSC_NULLPTR));
+      LibmeshPetscCallA(
+          nl.comm().get(),
+          SNESSetConvergenceTest(snes, petscNonlinearConverged, &problem, LIBMESH_PETSC_NULLPTR));
     }
 
     petscSetKSPDefaults(problem, ksp);

diff --git a/framework/src/utils/SlepcSupport.C b/framework/src/utils/SlepcSupport.C
@@ -732,7 +732,8 @@ mooseSlepcEigenFormJacobianA(SNES snes, Vec x, Mat jac, Mat pc, void * ctx)
 
   if (jismffd && eigen_problem->solverParams()._eigen_matrix_vector_mult)
   {
-    LibmeshPetscCallQ(MatMFFDSetFunction(jac, Moose::SlepcSupport::mooseSlepcEigenFormFunctionMFFD, ctx));
+    LibmeshPetscCallQ(
+        MatMFFDSetFunction(jac, Moose::SlepcSupport::mooseSlepcEigenFormFunctionMFFD, ctx));
 
     EPS eps = eigen_nl.getEPS();
 
@@ -1151,7 +1152,8 @@ PCApply_MoosePC(PC pc, Vec x, Vec y)
 
   PetscFunctionBegin;
   LibmeshPetscCallQ(PCGetOperators(pc, &Amat, &Pmat));
-  LibmeshPetscCallQ(PetscObjectQuery((PetscObject)Pmat, "formFunctionCtx", (PetscObject *)&container));
+  LibmeshPetscCallQ(
+      PetscObjectQuery((PetscObject)Pmat, "formFunctionCtx", (PetscObject *)&container));
   if (container)
     LibmeshPetscCallQ(PetscContainerGetPointer(container, &ctx));
   else
@@ -1181,7 +1183,8 @@ PCSetUp_MoosePC(PC pc)
 
   PetscFunctionBegin;
   LibmeshPetscCallQ(PCGetOperators(pc, &Amat, &Pmat));
-  LibmeshPetscCallQ(PetscObjectQuery((PetscObject)Pmat, "formFunctionCtx", (PetscObject *)&container));
+  LibmeshPetscCallQ(
+      PetscObjectQuery((PetscObject)Pmat, "formFunctionCtx", (PetscObject *)&container));
   if (container)
     LibmeshPetscCallQ(PetscContainerGetPointer(container, &ctx));
   else

diff --git a/modules/navier_stokes/src/problems/NavierStokesProblem.C b/modules/navier_stokes/src/problems/NavierStokesProblem.C
@@ -227,10 +227,12 @@ NavierStokesProblem::setupLSCMatrices(KSP schur_ksp)
 
     if (!_L)
       // If this is our first time in this routine, then we create the matrix
-      LibmeshPetscCall(MatCreateSubMatrix(our_parent_L, velocity_is, velocity_is, MAT_INITIAL_MATRIX, &_L));
+      LibmeshPetscCall(
+          MatCreateSubMatrix(our_parent_L, velocity_is, velocity_is, MAT_INITIAL_MATRIX, &_L));
     else
       // Else we reuse the matrix
-      LibmeshPetscCall(MatCreateSubMatrix(our_parent_L, velocity_is, velocity_is, MAT_REUSE_MATRIX, &_L));
+      LibmeshPetscCall(
+          MatCreateSubMatrix(our_parent_L, velocity_is, velocity_is, MAT_REUSE_MATRIX, &_L));
   }
 
   // Get the local index set complement corresponding to the pressure dofs from the velocity dofs
@@ -245,7 +247,8 @@ NavierStokesProblem::setupLSCMatrices(KSP schur_ksp)
       // preconditioner (no LSC), then we must have access to a pressure mass matrix
       mooseAssert(our_parent_Q, "This should be non-null");
       // Create a sub-matrix corresponding to the pressure index set
-      LibmeshPetscCall(MatCreateSubMatrix(our_parent_Q, pressure_is, pressure_is, mat_initialization, &_Q_scale));
+      LibmeshPetscCall(MatCreateSubMatrix(
+          our_parent_Q, pressure_is, pressure_is, mat_initialization, &_Q_scale));
     }
     else if (_have_mass_matrix) // If we don't have a mass matrix and the user has requested scaling
                                 // then the diagonal of A will be used
@@ -255,7 +258,8 @@ NavierStokesProblem::setupLSCMatrices(KSP schur_ksp)
       mooseAssert(our_parent_Q, "This should be non-null");
       // We are not commuting LSC, so we are doing Elman, and the user has passed us a mass matrix
       // tag. In this case we are creating a velocity mass matrix, so we use the velocity index set
-      LibmeshPetscCall(MatCreateSubMatrix(our_parent_Q, velocity_is, velocity_is, mat_initialization, &_Q_scale));
+      LibmeshPetscCall(MatCreateSubMatrix(
+          our_parent_Q, velocity_is, velocity_is, mat_initialization, &_Q_scale));
     }
   };
 
@@ -323,7 +327,8 @@ NavierStokesProblem::setupLSCMatrices(KSP schur_ksp)
       mooseAssert(_Q_scale, "This should be non-null");
       // Attach our scaling/mass matrix to the PETSc object. PETSc will use this during the
       // preconditioner application
-      LibmeshPetscCall(PetscObjectCompose((PetscObject)lsc_pc_pmat, "LSC_Qscale", (PetscObject)_Q_scale));
+      LibmeshPetscCall(
+          PetscObjectCompose((PetscObject)lsc_pc_pmat, "LSC_Qscale", (PetscObject)_Q_scale));
     }
   }
 

diff --git a/modules/optimization/src/executioners/OptimizeSolve.C b/modules/optimization/src/executioners/OptimizeSolve.C
@@ -170,9 +170,11 @@ OptimizeSolve::taoSolve()
   LibmeshPetscCallQ(TaoSetObjectiveRoutine(_tao, objectiveFunctionWrapper, this));
 #endif
 #if !PETSC_VERSION_LESS_THAN(3, 17, 0)
-  LibmeshPetscCallQ(TaoSetObjectiveAndGradient(_tao, NULL, objectiveAndGradientFunctionWrapper, this));
+  LibmeshPetscCallQ(
+      TaoSetObjectiveAndGradient(_tao, NULL, objectiveAndGradientFunctionWrapper, this));
 #else
-  LibmeshPetscCallQ(TaoSetObjectiveAndGradientRoutine(_tao, objectiveAndGradientFunctionWrapper, this));
+  LibmeshPetscCallQ(
+      TaoSetObjectiveAndGradientRoutine(_tao, objectiveAndGradientFunctionWrapper, this));
 #endif
 
   // Set matrix-free version of the Hessian function
@@ -550,7 +552,8 @@ OptimizeSolve::taoALCreate()
   {
     // Create equality vector
     LibmeshPetscCallQ(VecCreate(_my_comm.get(), &_ce));
-    LibmeshPetscCallQ(VecSetSizes(_ce, _obj_function->getNumEqCons(), _obj_function->getNumEqCons()));
+    LibmeshPetscCallQ(
+        VecSetSizes(_ce, _obj_function->getNumEqCons(), _obj_function->getNumEqCons()));
     LibmeshPetscCallQ(VecSetFromOptions(_ce));
     LibmeshPetscCallQ(VecSetUp(_ce));
 
@@ -573,7 +576,8 @@ OptimizeSolve::taoALCreate()
   {
     // Create inequality vector
     LibmeshPetscCallQ(VecCreate(_my_comm.get(), &_ci));
-    LibmeshPetscCallQ(VecSetSizes(_ci, _obj_function->getNumInEqCons(), _obj_function->getNumInEqCons()));
+    LibmeshPetscCallQ(
+        VecSetSizes(_ci, _obj_function->getNumInEqCons(), _obj_function->getNumInEqCons()));
     LibmeshPetscCallQ(VecSetFromOptions(_ci));
     LibmeshPetscCallQ(VecSetUp(_ci));
 
@@ -588,7 +592,8 @@ OptimizeSolve::taoALCreate()
     LibmeshPetscCallQ(MatSetUp(_gradient_i));
 
     // Set the Inequality constraints
-    LibmeshPetscCallQ(TaoSetInequalityConstraintsRoutine(_tao, _ci, inequalityFunctionWrapper, this));
+    LibmeshPetscCallQ(
+        TaoSetInequalityConstraintsRoutine(_tao, _ci, inequalityFunctionWrapper, this));
 
     // Set the Inequality constraints Jacobian
     LibmeshPetscCallQ(TaoSetJacobianInequalityRoutine(