epiforecasts-timeseries #88
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| name: "epiforecasts-timeseries" | |
| on: | |
| workflow_dispatch: | |
| schedule: | |
| - cron: "0 13 * * 1" | |
| jobs: | |
| generate-forecasts: | |
| runs-on: ubuntu-20.04 | |
| env: | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| steps: | |
| - uses: actions/checkout@v3 | |
| with: | |
| submodules: true | |
| - uses: r-lib/actions/setup-r@v2 | |
| with: | |
| use-public-rspm: true | |
| - name: Install system dependencies | |
| run: sudo apt-get install libudunits2-dev libcurl4-openssl-dev libgdal-dev libv8-dev | |
| - uses: r-lib/actions/setup-renv@v2 | |
| - name: Generate forecasts | |
| working-directory: models/${{ github.workflow }} | |
| run: | | |
| renv::restore() | |
| source("main.R") | |
| shell: Rscript {0} | |
| - uses: actions/upload-artifact@v3 | |
| with: | |
| name: ${{ github.workflow }} | |
| retention-days: 5 | |
| path: models/${{ github.workflow }}/data-processed/** | |
| upload-forecasts: | |
| needs: generate-forecasts | |
| runs-on: ubuntu-20.04 | |
| steps: | |
| - uses: actions/checkout@v3 | |
| with: | |
| repository: 'european-modelling-hubs/covid19-forecast-hub-europe' | |
| token: ${{ secrets.FORECASTHUB_TOKEN }} | |
| - uses: actions/[email protected] | |
| with: | |
| name: ${{ github.workflow }} | |
| path: data-processed | |
| - uses: peter-evans/create-pull-request@67df31e08a133c6a77008b89689677067fef169e | |
| id: cpr | |
| with: | |
| token: ${{ secrets.FORECASTHUB_TOKEN }} | |
| commit-message: ${{ github.workflow }}'s automated submission | |
| committer: epiforecasts-bot <[email protected]> | |
| author: epiforecasts-bot <[email protected]> | |
| branch: ${{ github.workflow }} | |
| title: ${{ github.workflow }}'s automated submission | |
| body: Automated submission for @sophiemeakin via https://github.com/european-modelling-hubs/covid19-forecast-hub-europe-submissions | |
| delete-branch: true | |
| - name: Check outputs | |
| run: | | |
| echo "Pull Request Number - ${{ steps.cpr.outputs.pull-request-number }}" | |
| echo "Pull Request URL - ${{ steps.cpr.outputs.pull-request-url }}" |