.github/workflows/FluID.yml #43
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| name: DownloadFluID | ||
| on: | ||
| workflow_dispatch: | ||
| schedule: | ||
| - cron: "30 18 * * 5" | ||
| jobs: | ||
| fluID_job: | ||
| if: github.repository_owner == 'european-modelling-hubs' | ||
| runs-on: ubuntu-latest | ||
| outputs: | ||
| changed_files: ${{ steps.download_fluID_data.outputs.imported_snapshot }} | ||
| steps: | ||
| # Checkout the python tools repo | ||
| # ------------------------------------------- | ||
| - name: checkout python tools repo | ||
| uses: actions/checkout@v3 | ||
| with: | ||
| token: ${{ secrets.GITHUB_TOKEN }} | ||
| repository: 'european-modelling-hubs/hub-tools' | ||
| ref: 'main' | ||
| path: './tools/' | ||
| # Checkout the data repository | ||
| # ------------------------------------------- | ||
| - name: checkout data repo | ||
| uses: actions/checkout@v3 | ||
| with: | ||
| token: ${{ secrets.GITHUB_TOKEN }} | ||
| repository: 'european-modelling-hubs/ari-forecast-hub' | ||
| ref: 'main' | ||
| path: './repo/' | ||
| # Run Pyton code | ||
| # ------------------------- | ||
| - uses: actions/setup-python@v4 | ||
| with: | ||
| python-version: '3.10' | ||
| - run: pip install pandas pycountry==23.12.11 | ||
| - name: download fluID data | ||
| id: download_fluID_data | ||
| run: | | ||
| python ./tools/code/get_fluID_data.py --hub_path ./repo --disease "ARI" | ||
| - name: Commit data repo changes | ||
| uses: EndBug/add-and-commit@v7 | ||
| with: | ||
| cwd: './repo' | ||
| message: "Update data storage" | ||
| default_author: github_actions | ||
| push: true | ||
| call-persisting-wf: | ||
| needs: fluID_job | ||
| uses: european-modelling-hubs/ari-forecast-hub/.github/workflows/persist_changes.yml@main | ||
|
Check failure on line 68 in .github/workflows/FluID.yml
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| with: | ||
| changes-list: ${{ needs.fluID_job.outputs.changed_files }} | ||
| secrets: | ||
| envPAT: ${{ secrets.GITHUB_TOKEN }} | ||
