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Hi Ana, |
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Hi Ana, Jaime,
I had this problem myself when I installed ete3 from scratch a few weeks
ago.
If I remember correctly, I had the impression that the initial python
installed upon environment creation was a higher version than the one ete3
accepted, so that when conda was installing ete3, it was trying to
downgrade it, and that's the bit in the ete3 installation that crashed for
some reason.
Anyhow, in my case the problem was fixed when I installed the latest
version of ete3.
In fact, no idea why, but in my computer and it seems in yours too, conda
is not correctly selecting the latest version (Jaime, any idea why?).
Anyhow, bottom line, try this as your last command, see if it works:
conda install -c etetoolkit ete3==3.1.2 ete_toolchain
ciao,
…On Wed, Jun 30, 2021 at 9:12 PM Jaime Huerta-Cepas ***@***.***> wrote:
Hi Ana,
this seems a problem with your conda environment (even the python binary
is not executing?).
Could you try a clean conda installation? Then, unless you are planning to
use the ete build command line, you can skip the installation of
ete_toolchain and just install ete3.
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Department of Genetics, Microbiology and Statistics
Universitat de Barcelona
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Hello everybody,
I was trying to install ete3 in a conda environment of Linux with the following lines of code:
conda create -n ete3 python=3
conda activate ete3
conda install -c etetoolkit ete3 ete_toolchain
I am having problems with the last one, the error I got:
LinkError: pre-link script failed for package etetoolkit::ete3-3.0.0b35-py_0
location of failed script: /home/ana/miniconda3/pkgs/ete3-3.0.0b35-py_0/bin/.ete3-pre-link.sh
==> script messages <==
==> script output <==
stdout:
stderr: + /home/ana/miniconda3/envs/ete3/bin/python /home/ana/miniconda3/pkgs/ete3-3.0.0b35-py_0/link.py
/home/ana/miniconda3/pkgs/ete3-3.0.0b35-py_0/bin/.ete3-pre-link.sh: line 2: /home/ana/miniconda3/envs/ete3/bin/python: No such file or directory
return code: 127
I also tried to install it with the last version of python available but I did not succeed.
Thank you in advance for the help,
Best regards,
Ana González Guerra
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