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@etetoolkit

ETE Toolkit

A Python framework for the analysis and visualization of trees.

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  1. ete ete Public

    Python package for building, comparing, annotating, manipulating and visualising trees. It provides a comprehensive API and a collection of command line tools, including utilities to work with the …

    Python 790 214

  2. cookbook cookbook Public

    HTML 17 9

  3. course course Public

    Jupyter Notebook 12 9

  4. treematcher treematcher Public

    Search flexible patterns within tree structures using regular expression like syntax.

    Python 9 12

  5. pmodeltest pmodeltest Public

    Python implementation of modeltest/prottest supporting proteins and nucleotides (can be run in parallel).

    Python 5 5

  6. ext_apps ext_apps Public

    A compilation of external software used by ETE

    C 4 6

Repositories

Showing 10 of 13 repositories
  • ete Public

    Python package for building, comparing, annotating, manipulating and visualising trees. It provides a comprehensive API and a collection of command line tools, including utilities to work with the NCBI taxonomy tree.

    etetoolkit/ete’s past year of commit activity
    Python 790 GPL-3.0 214 217 9 Updated Oct 28, 2024
  • ete-data Public

    Data files to use with the ETE Toolkit

    etetoolkit/ete-data’s past year of commit activity
    Python 0 GPL-3.0 1 0 0 Updated Jul 3, 2024
  • ete4_apps Public

    command line applications based on ete4

    etetoolkit/ete4_apps’s past year of commit activity
    HTML 0 0 0 0 Updated Dec 7, 2021
  • course Public
    etetoolkit/course’s past year of commit activity
    Jupyter Notebook 12 9 0 0 Updated Sep 1, 2020
  • webplugin Public

    Experiments for a new webplugin module (examples for phylotastic.org project )

    etetoolkit/webplugin’s past year of commit activity
    Python 4 4 1 1 Updated May 19, 2020
  • pmodeltest Public

    Python implementation of modeltest/prottest supporting proteins and nucleotides (can be run in parallel).

    etetoolkit/pmodeltest’s past year of commit activity
    Python 5 5 2 0 Updated Feb 26, 2020
  • logicali Public
    etetoolkit/logicali’s past year of commit activity
    Python 0 GPL-3.0 1 0 0 Updated May 28, 2018
  • etetoolkit_GSoC Public
    etetoolkit/etetoolkit_GSoC’s past year of commit activity
    0 0 0 0 Updated Jan 23, 2018
  • ete_toolchain Public
    etetoolkit/ete_toolchain’s past year of commit activity
    0 0 1 0 Updated Nov 3, 2017
  • treematcher Public

    Search flexible patterns within tree structures using regular expression like syntax.

    etetoolkit/treematcher’s past year of commit activity
    Python 9 12 3 0 Updated Sep 22, 2017
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