Fixes readme generation

dockerfiles/Makefile

@@ -20,4 +20,4 @@ bump-%:
 	tbump --no-tag --no-push $(shell pysemver bump $* $(shell tbump current-version)) && make changelog && git add changelog.md && git commit -m "Updates changelog"
 
 readme:
-	docker run -it --rm --entrypoint python -v $(PWD):/host -w /host $(NAMESPACE)/$(REPOSITORY):$(VERSION) /host/generate.py $(ENVIRONMENT_FILE)
+	docker run -it --rm --entrypoint python -v $(PWD)/../:/host -w /host $(NAMESPACE)/$(REPOSITORY):$(VERSION) /host/generate.py $(REPOSITORY)/$(ENVIRONMENT_FILE) $(REPOSITORY)

dockerfiles/climate-notebook-gpu/README.md

@@ -3,4 +3,4 @@
 | ML packages |
 | ----------- |
 | rapids 0.0.1 |
-| cupy 13.2.0 |
+| cupy 13.2.0 |

dockerfiles/climate-notebook/README.md

@@ -9,8 +9,9 @@
 | netcdf4 1.6.5 | gsw-xarray 0.4.0 | seaborn 0.13.2 |
 | s3fs 2024.6.0 |  | cartopy 0.23.0 |
 | zarr 2.18.2 |  | datashader 0.16.2 |
+
 | Computing packages | Discovery packages |
 | ------------------ | ------------------ |
 | dask-gateway 2024.1.0 | intake-esm 2024.2.6 |
 |  | intake-stac 0.4.0 |
-|  | intake-xarray 0.7.0 |
+|  | intake-xarray 0.7.0 |

dockerfiles/climate-notebook-gpu/generate.py → dockerfiles/generate.py

@@ -1,3 +1,4 @@
+import os
 import json
 import re
 import subprocess
@@ -8,6 +9,7 @@
 def main():
     parser = argparse.ArgumentParser()
     parser.add_argument("file", help="Conda environment file")
+    parser.add_argument("output-path", help="Output directory")
 
     kwargs = vars(parser.parse_args())
 
@@ -48,15 +50,17 @@ def main():
         ]
         rows = "\n".join(f"| {x} |" for x in rows)
 
-        table.append(f"{header}\n{rows}")
+        table.append(f"{header}\n{rows}\n")
 
     table = "\n".join(table)
 
     data = f"""# Packages
 
 {table}"""
 
-    with open("README.md", "w") as fd:
+    output_path = os.path.join(kwargs["output-path"], "README.md")
+
+    with open(output_path, "w") as fd:
         fd.write(data)