v1.4.0

Added

• --override_basecaller_cfg parameter for cases where automatic basecall model detection fails or users wish to override the automatic choice.
• --medaka_model_path parameter to provide a custom medaka model. This is intended for users testing experimental Medaka models and will not be needed for general use.

Removed

• The now redundant --basecaller_cfg parameter as its value is now automatically detected from the input data on a per-sample basis.

Changed

• Min and max read length determined per sample based on approx_size
• Emit assembly quality stats as part of final workflow outputs
• Trim length parameter can be set to 0.