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v0.3.0

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@epi2melabs-bot epi2melabs-bot released this 03 Aug 07:35
· 151 commits to master since this release

Changed

  • VCF files now use the sample alias as sample name instead of SAMPLE.
  • The reference FASTA file with sanitized sequence headers (with :, *, and whitespace replaced with _) which is used by the workflow internally due to some tools not tolerating these symbols in the sequence IDs is now also published alongside the other results.

Added

  • Parameter --combine_results to also output merged BAM and VCF files.