v0.3.0
Changed
- VCF files now use the sample alias as sample name instead of
SAMPLE
. - The reference FASTA file with sanitized sequence headers (with
:
,*
, and whitespace replaced with_
) which is used by the workflow internally due to some tools not tolerating these symbols in the sequence IDs is now also published alongside the other results.
Added
- Parameter
--combine_results
to also output merged BAM and VCF files.