Merge branch 'CW-2087--fix-schema' into 'dev'

CW-2087 -- fix schema See merge request epi2melabs/workflows/wf-amplicon!5
epi2me-labs · May 15, 2023 · 4a2be53 · 4a2be53
2 parents faaab79 + bbbeb27
commit 4a2be53
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diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -4,8 +4,9 @@ All notable changes to this project will be documented in this file.
 The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/),
 and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).
 
-## [unreleased]
+## [v0.1.1]
 ### Fixed
+- Reference not being required by the schema.
 - Bug in documentation that prevented blog post from building.
 
 ## [v0.1.0]

diff --git a/nextflow.config b/nextflow.config
@@ -64,7 +64,7 @@ manifest {
     description     = 'Amplicon workflow'
     mainScript      = 'main.nf'
     nextflowVersion = '>=20.10.0'
-    version         = 'v0.1.0'
+    version         = 'v0.1.1'
 }
 
 executor {

diff --git a/nextflow_schema.json b/nextflow_schema.json
@@ -29,11 +29,12 @@
                     "type": "string",
                     "format": "file-path",
                     "description": "Path to a reference FASTA file.",
-                    "help_text": "If provided, the workflow will perform variant calling against the reference. Otherwise, it will cluster reads and create the consensus sequence for each cluster. The reference file should contain one ref. sequence per amplicon."
+                    "help_text": "The reference file should contain one sequence per amplicon."
                 }
             },
             "required": [
-                "fastq"
+                "fastq",
+                "reference"
             ]
         },
         "samples": {