update on behalf of data-quality-control-action

emo-bon · Mar 29, 2024 · f4003d2 · f4003d2
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commit f4003d2
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Showing 10 changed files with 403 additions and 1,555 deletions.
diff --git a/data-quality-control/dqc.csv b/data-quality-control/dqc.csv
diff --git a/data-quality-control/report.csv b/data-quality-control/report.csv
diff --git a/logsheets/filtered/sediment_measured.csv b/logsheets/filtered/sediment_measured.csv
diff --git a/logsheets/filtered/sediment_sampling.csv b/logsheets/filtered/sediment_sampling.csv
@@ -69,8 +69,8 @@ EMO BON RFormosa SO 231025 blank,EMOBON metagenome sediment sample from station
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-EMO BON RFormosa SO 240304 micro(1),,,,,,,RFormosa_So_240304,,,,micro,,1,,,,,,,,,,,,,,,,,,,,,,,EMOBON_RFormosa_So_240304_micro_1
-EMO BON RFormosa SO 240304 micro(2),,,,,,,RFormosa_So_240304,,,,micro,,2,,,,,,,,,,,,,,,,,,,,,,,EMOBON_RFormosa_So_240304_micro_2
-EMO BON RFormosa SO 240304 micro(3),,,,,,,RFormosa_So_240304,,,,micro,,3,,,,,,,,,,,,,,,,,,,,,,,EMOBON_RFormosa_So_240304_micro_3
-EMO BON RFormosa SO 240304 micro(4),,,,,,,RFormosa_So_240304,,,,micro,,4,,,,,,,,,,,,,,,,,,,,,,,EMOBON_RFormosa_So_240304_micro_4
-EMO BON RFormosa SO 240304 blank,,,,,,,RFormosa_So_240304,,,,micro,,blank,,,,,,,,,,,,,,,,,,,,,,,EMOBON_RFormosa_So_240304_micro_blank
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diff --git a/logsheets/filtered/water_measured.csv b/logsheets/filtered/water_measured.csv
diff --git a/logsheets/filtered/water_sampling.csv b/logsheets/filtered/water_sampling.csv
@@ -127,8 +127,18 @@ EMO BON RFormosa Wa 231024 0.22um_1,EMOBON metagenome water sample from station
 EMO BON RFormosa Wa 231024 0.22um_2,EMOBON metagenome water sample from station RFormosa collected on 2023-10-24 size fraction 0.2-3um,1874687,marine plankton metagenome,metagenome,lagoon [ENVO_00000038];marine water body [ENVO:00001999]; surface water [ENVO:00002042],2023-10-24 00:00:00,RFormosa_Wa_231024,Bruno Louro,https://orcid.org/0000-0001-8164-581X,ebb_tide,0.2,2,5,fi,0.2-3,3,0.2,Y,bucket,WaSOP 1,peristaltic pump,2023-10-24 00:00:00,"Ed7, room 1.10, freezer #300387-118",-80,Bruno Louro,https://orcid.org/0000-0001-8164-581X,,,Y,NA,NA,NA,NA,NA,NA,NA,NA,EMOBON_RFormosa_Wa_231024_0.2um_2
 EMO BON RFormosa Wa 231024 0.22um_3,EMOBON metagenome water sample from station RFormosa collected on 2023-10-24 size fraction 0.2-3um,1874687,marine plankton metagenome,metagenome,lagoon [ENVO_00000038];marine water body [ENVO:00001999]; surface water [ENVO:00002042],2023-10-24 00:00:00,RFormosa_Wa_231024,Bruno Louro,https://orcid.org/0000-0001-8164-581X,ebb_tide,0.2,3,5,fi,0.2-3,3,0.2,Y,bucket,WaSOP 1,peristaltic pump,2023-10-24 00:00:00,"Ed7, room 1.10, freezer #300387-118",-80,Bruno Louro,https://orcid.org/0000-0001-8164-581X,,,Y,NA,NA,NA,NA,NA,NA,NA,NA,EMOBON_RFormosa_Wa_231024_0.2um_3
 EMO BON RFormosa Wa 231024 0.22um_4,EMOBON metagenome water sample from station RFormosa collected on 2023-10-24 size fraction 0.2-3um,1874687,marine plankton metagenome,metagenome,lagoon [ENVO_00000038];marine water body [ENVO:00001999]; surface water [ENVO:00002042],2023-10-24 00:00:00,RFormosa_Wa_231024,Bruno Louro,https://orcid.org/0000-0001-8164-581X,ebb_tide,0.2,4,5,fi,0.2-3,3,0.2,Y,bucket,WaSOP 1,peristaltic pump,2023-10-24 00:00:00,"Ed7, room 1.10, freezer #300387-118",-80,Bruno Louro,https://orcid.org/0000-0001-8164-581X,,,Y,NA,NA,NA,NA,NA,NA,NA,NA,EMOBON_RFormosa_Wa_231024_0.2um_4
-EMO BON RFormosa Wa 231024 3um_Blank,EMOBON metagenome water sample from station RFormosa collected on 2023-10-24 size fraction 3-200um,1874687,marine plankton metagenome,metagenome,lagoon [ENVO_00000038];marine water body [ENVO:00001999]; surface water [ENVO:00002042],2023-10-24 00:00:00,RFormosa_Wa_231024,Bruno Louro,https://orcid.org/0000-0001-8164-581X,ebb_tide,NA,blank,5,fi,3-200,200,3,N,NA,WaSOP 1,peristaltic pump,2023-10-24 00:00:00,"Ed7, room 1.10, freezer #300387-118",-80,Bruno Louro,https://orcid.org/0000-0001-8164-581X,,,Y,NA,NA,NA,NA,NA,NA,NA,NA,EMOBON_RFormosa_Wa_231024_3um_blank
-EMO BON RFormosa Wa 231024 0.22um_Blank,EMOBON metagenome water sample from station RFormosa collected on 2023-10-24 size fraction 0.2-3um,1874687,marine plankton metagenome,metagenome,lagoon [ENVO_00000038];marine water body [ENVO:00001999]; surface water [ENVO:00002042],2023-10-24 00:00:00,RFormosa_Wa_231024,Bruno Louro,https://orcid.org/0000-0001-8164-581X,ebb_tide,NA,blank,5,fi,0.2-3,3,0.2,N,NA,WaSOP 1,peristaltic pump,2023-10-24 00:00:00,"Ed7, room 1.10, freezer #300387-118",-80,Bruno Louro,https://orcid.org/0000-0001-8164-581X,,,Y,NA,NA,NA,NA,NA,NA,NA,NA,EMOBON_RFormosa_Wa_231024_0.2um_blank
+EMO BON RFormosa Wa 231024 3um_Blank,EMOBON metagenome water sample from station RFormosa collected on 2023-10-24 size fraction 3-200um,32644,unidentified,metagenome,lagoon [ENVO_00000038];marine water body [ENVO:00001999]; surface water [ENVO:00002042],2023-10-24 00:00:00,RFormosa_Wa_231024,Bruno Louro,https://orcid.org/0000-0001-8164-581X,ebb_tide,NA,blank,5,fi,3-200,200,3,N,NA,WaSOP 1,peristaltic pump,2023-10-24 00:00:00,"Ed7, room 1.10, freezer #300387-118",-80,Bruno Louro,https://orcid.org/0000-0001-8164-581X,,,Y,NA,NA,NA,NA,NA,NA,NA,NA,EMOBON_RFormosa_Wa_231024_3um_blank
+EMO BON RFormosa Wa 231024 0.22um_Blank,EMOBON metagenome water sample from station RFormosa collected on 2023-10-24 size fraction 0.2-3um,32644,unidentified,metagenome,lagoon [ENVO_00000038];marine water body [ENVO:00001999]; surface water [ENVO:00002042],2023-10-24 00:00:00,RFormosa_Wa_231024,Bruno Louro,https://orcid.org/0000-0001-8164-581X,ebb_tide,NA,blank,5,fi,0.2-3,3,0.2,N,NA,WaSOP 1,peristaltic pump,2023-10-24 00:00:00,"Ed7, room 1.10, freezer #300387-118",-80,Bruno Louro,https://orcid.org/0000-0001-8164-581X,,,Y,NA,NA,NA,NA,NA,NA,NA,NA,EMOBON_RFormosa_Wa_231024_0.2um_blank
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@@ -139,13 +149,3 @@ EMO BON RFormosa Wa 231024 0.22um_Blank,EMOBON metagenome water sample from stat
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-EMO BON RFormosa Wa 240304 3um_1,,,,,,,RFormosa_Wa_240304,,,,,1,,,,,3,,,,,,,,,,,,,,,,,,,,,EMOBON_RFormosa_Wa_240304_3um_1
-EMO BON RFormosa Wa 240304 3um_2,,,,,,,RFormosa_Wa_240304,,,,,2,,,,,3,,,,,,,,,,,,,,,,,,,,,EMOBON_RFormosa_Wa_240304_3um_2
-EMO BON RFormosa Wa 240304 3um_3,,,,,,,RFormosa_Wa_240304,,,,,3,,,,,3,,,,,,,,,,,,,,,,,,,,,EMOBON_RFormosa_Wa_240304_3um_3
-EMO BON RFormosa Wa 240304 3um_4,,,,,,,RFormosa_Wa_240304,,,,,4,,,,,3,,,,,,,,,,,,,,,,,,,,,EMOBON_RFormosa_Wa_240304_3um_4
-EMO BON RFormosa Wa 240304 0.22um_1,,,,,,,RFormosa_Wa_240304,,,,,1,,,,,0.2,,,,,,,,,,,,,,,,,,,,,EMOBON_RFormosa_Wa_240304_0.2um_1
-EMO BON RFormosa Wa 240304 0.22um_2,,,,,,,RFormosa_Wa_240304,,,,,2,,,,,0.2,,,,,,,,,,,,,,,,,,,,,EMOBON_RFormosa_Wa_240304_0.2um_2
-EMO BON RFormosa Wa 240304 0.22um_3,,,,,,,RFormosa_Wa_240304,,,,,3,,,,,0.2,,,,,,,,,,,,,,,,,,,,,EMOBON_RFormosa_Wa_240304_0.2um_3
-EMO BON RFormosa Wa 240304 0.22um_4,,,,,,,RFormosa_Wa_240304,,,,,4,,,,,0.2,,,,,,,,,,,,,,,,,,,,,EMOBON_RFormosa_Wa_240304_0.2um_4
-EMO BON RFormosa Wa 240304 3um_Blank,,,,,,,RFormosa_Wa_240304,,,,,blank,,,,,3,,,,,,,,,,,,,,,,,,,,,EMOBON_RFormosa_Wa_240304_3um_blank
-EMO BON RFormosa Wa 240304 0.22um_Blank,,,,,,,RFormosa_Wa_240304,,,,,blank,,,,,0.2,,,,,,,,,,,,,,,,,,,,,EMOBON_RFormosa_Wa_240304_0.2um_blank