linked-data-etl #2
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| name: linked-data-etl | |
| on: | |
| workflow_dispatch: | |
| schedule: | |
| - cron: '0 0 1 */6 *' | |
| jobs: | |
| job: | |
| runs-on: ubuntu-latest | |
| env: | |
| ROCRATE_PROFILE_URI: https://data.emobon.embrc.eu/observatory-profile/0.15 | |
| steps: | |
| - name: checkout | |
| uses: actions/checkout@v3 | |
| - name: download | |
| uses: emo-bon/logsheet-downloader-action@master | |
| - name: git-auto-commit-action | |
| uses: stefanzweifel/git-auto-commit-action@v5 | |
| with: | |
| commit_message: update on behalf of logsheet-downloader-action | |
| - name: data-quality-control-action | |
| uses: emo-bon/data-quality-control-action@main | |
| env: | |
| PAT: ${{ secrets.GITHUB_TOKEN }} | |
| REPO: ${{ github.repository }} | |
| ASSIGNEE: melinalou | |
| - name: git-auto-commit-action | |
| uses: stefanzweifel/git-auto-commit-action@v5 | |
| with: | |
| commit_message: update on behalf of data-quality-control-action | |
| - name: rocrate-sembench-setup | |
| uses: vliz-be-opsci/rocrate-sembench-setup@main | |
| env: | |
| PROFILE: ${{ env.ROCRATE_PROFILE_URI }} | |
| - name: semantify | |
| uses: vliz-be-opsci/semantify@main | |
| - name: rocrate-sembench-cleanup | |
| run: sudo rm -rf ~sembench_data_cache/ ~sembench_kwargs.json | |
| - name: git-auto-commit-action | |
| uses: stefanzweifel/git-auto-commit-action@v5 | |
| with: | |
| commit_message: update on behalf of semantify | |
| - name: rocrate-metadata-generator-action | |
| uses: emo-bon/rocrate-metadata-generator-action@main | |
| env: | |
| PROFILE: ${{ env.ROCRATE_PROFILE_URI }} | |
| REPO: ${{ github.repository }} | |
| - name: git-auto-commit-action | |
| uses: stefanzweifel/git-auto-commit-action@v5 | |
| with: | |
| commit_message: update on behalf of rocrate-metadata-generator-action | |
| - name: rocrate-to-pages | |
| uses: vliz-be-opsci/rocrate-to-pages@latest | |
| with: | |
| multiple_rocrates: true | |
| release_management: false | |
| include_draft: false | |
| index_html: false | |
| - name: actions-gh-pages | |
| uses: peaceiris/actions-gh-pages@v3 | |
| with: | |
| github_token: ${{ secrets.GITHUB_TOKEN }} | |
| publish_dir: ./unicornpages |