Quoted arguments in cd_publish #3

	name: CD_publish

	on:
	push:

	#on:
	# push:
	# branches:
	# - '[0-9]+.[0-9]+.[0-9]+'
	# - '[0-9]+.[0-9]+.[0-9]+-*'
	#
	# Allows you to run this workflow manually from the Actions tab
	workflow_dispatch:

	jobs:
	build:
	runs-on: ubuntu-latest

	steps:
	- uses: actions/checkout@v4

	- name: Setup Python 3.11
	uses: actions/setup-python@v5
	with:
	python-version: 3.11

	- name: Install EMMOntoPy and pyvode
	run: \|
	pip install --upgrade pip
	pip install EMMOntoPy pylode==2.13.2

	- name: Create build directory
	run: mkdir build

	- name: Copy json-ld context
	run: cp -r context build/.

	- name: Generate squashed ontology
	run: ontoconvert -saw
	-c "http://www.w3.org/2004/02/skos/core#prefLabel-->http://www.w3.org/2000/01/rdf-schema#label"
	-c "elucidation-->http://www.w3.org/2000/01/rdf-schema#comment"
	-c "definition-->http://www.w3.org/2000/01/rdf-schema#comment"
	oteio.ttl build/oteio.ttl
	#-c comment-->http://www.w3.org/2000/01/rdf-schema#comment

	- name: Generate inferred ontology
	run: ontoconvert -saw --reasoner=HermiT
	-c "http://www.w3.org/2004/02/skos/core#prefLabel-->http://www.w3.org/2000/01/rdf-schema#label"
	-c "elucidation-->http://www.w3.org/2000/01/rdf-schema#comment"
	-c "definition-->http://www.w3.org/2000/01/rdf-schema#comment"
	oteio.ttl build/oteio-inferred.ttl
	#-c comment-->http://www.w3.org/2000/01/rdf-schema#comment

	- name: Generate documentation
	run: pylode -i build/oteio-inferred.ttl -o build/oteio.html -p ontdoc

	- name: Deploy
	uses: JamesIves/github-pages-deploy-action@v4
	with:
	folder: build # The folder the action should deploy.

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