Minor clean up (#178)

Remove pylint configs and update code base.
Remove all TODO and XXX comments in favor of dedicated issues on GitHub.

Keep mypy at v1.4.1 to support Python 3.7.
Add comments about pre-commit hook versions.

Remove unnecessary future import.

.github/static/get_dic2owl_deps.py

@@ -31,7 +31,7 @@ def main(argv_input: list = None) -> Set[str]:
     for file in args.requirements_files:
         if not file.exists():
             raise FileNotFoundError(f"Could not find {file} !")
-        with open(file.resolve(), "r") as handle:
+        with open(file.resolve(), "r", encoding="utf8") as handle:
             for line in handle.readlines():
                 match = requirements_regex.fullmatch(line)
                 if match is None:

dic2owl/dic2owl/dic2owl.py

@@ -77,10 +77,6 @@ class Generator:
         "ontology/cif-ddl.ttl"
     )
 
-    # TODO:
-    # Should `comments` be replaced with a dict `annotations` for annotating
-    # the ontology itself?  If so, we should import Dublin Core.
-
     def __init__(
         self,
         dicfile: "StrPath",
@@ -187,10 +183,8 @@ def _add_data_value(self, item: dict) -> None:
         for ddl_name, value in item.items():
             if ddl_name.startswith("_type."):
                 if ddl_name == "_type.dimension":
-                    # TODO - fix special case
                     pass
                 elif value == "Implied":
-                    # TODO - fix special case
                     pass
                 else:
                     parents.append(self.ddl[value])
@@ -221,11 +215,6 @@ class `cls`.
 
     def _add_metadata(self) -> None:
         """Adds metadata to the generated ontology."""
-        # TODO:
-        # Is there a way to extract metadata from the dic object like
-        # _dictionary_audit.version?
-        # onto.set_version(version="XXX")
-
         for comment in self.comments:
             self.onto.metadata.comment.append(comment)
         self.onto.metadata.comment.append(
@@ -275,4 +264,4 @@ def main(
         overwrite=True,
     )
 
-    return gen  # XXX - just for debugging
+    return gen