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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1 +1,80 @@ | ||
| [] | ||
| [ | ||
| { | ||
| "file": "/home/eb97ziwi/Proj/enerscape/src/distance.h", | ||
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| "kind": 6, | ||
| "parent_name": "", | ||
| "name": "energy(Rcpp::NumericVector, Rcpp::NumericVector, double, double, bool)", | ||
| "file": "/home/eb97ziwi/Proj/enerscape/src/enerscape.cpp", | ||
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| "name": "energyscape(Rcpp::NumericMatrix, int, double, double, bool)", | ||
| "file": "/home/eb97ziwi/Proj/enerscape/src/enerscape.cpp", | ||
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|---|---|---|
|
|
@@ -5,5 +5,5 @@ | |
| "ascending": true | ||
| } | ||
| ], | ||
| "path": "~/enerscape" | ||
| "path": "~/Proj/enerscape" | ||
| } | ||
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,14 +1,14 @@ | ||
| { | ||
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,5 +1,5 @@ | ||
| { | ||
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| "TabSet2": 0, | ||
| "TabSet2": 3, | ||
| "TabZoom": {} | ||
| } |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
|
|
@@ -2,3 +2,4 @@ | |
| .Rhistory | ||
| .RData | ||
| .Ruserdata | ||
| inst/doc | ||
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
|
|
@@ -2,7 +2,7 @@ Package: enerscape | |
| Type: Package | ||
| Title: Compute | ||
| Energy Landscapes | ||
| Version: 0.2.0 | ||
| Version: 1.0.0 | ||
| Author: Emilio Berti | ||
| Maintainer: Emilio Berti <[email protected]> | ||
| Description: Compute energy landscapes using a digital elevation model raster and body mass of animals. Vignette available at: <https://emilio-berti.github.io/enerscape.html>. | ||
|
|
@@ -11,18 +11,15 @@ Encoding: UTF-8 | |
| LazyData: true | ||
| Imports: | ||
| Rcpp, | ||
| raster, | ||
| gdistance, | ||
| rgdal, | ||
| rgeos, | ||
| sp, | ||
| Matrix | ||
| methods, | ||
| terra | ||
| Suggests: | ||
| knitr, | ||
| rmarkdown, | ||
| testthat (>= 3.0.0) | ||
| LinkingTo: Rcpp | ||
| RoxygenNote: 7.1.1 | ||
| RoxygenNote: 7.2.0 | ||
| Depends: | ||
| R (>= 2.10) | ||
| Config/testthat/edition: 3 | ||
| VignetteBuilder: knitr | ||
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,3 +1,8 @@ | ||
| useDynLib(enerscape, .registration=TRUE) | ||
| importFrom(Rcpp, evalCpp) | ||
| exportPattern("^[[:alpha:]]+") | ||
|
|
||
| importFrom("methods", "is") | ||
| importFrom("terra", | ||
| "rast", "rasterize", "writeRaster", "aggregate", | ||
| "res", "crs", "crs<-", "ext", "ext<-") |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,23 +1,58 @@ | ||
| # Generated by using Rcpp::compileAttributes() -> do not edit by hand | ||
| # Generator token: 10BE3573-1514-4C36-9D1C-5A225CD40393 | ||
|
|
||
| distance <- function(dem, center, res) { | ||
| .Call(`_enerscape_distance`, dem, center, res) | ||
| #' Spatial distances | ||
| #' | ||
| #' @param x matrix with values | ||
| #' @param center numeric value (double) with the value of the focal cell | ||
| #' @param res numeric value (double) of the spatial resolution of the matrix | ||
| #' @return Vector with values the distances between x and center | ||
| distances <- function(x, center, res) { | ||
| .Call(`_enerscape_distances`, x, center, res) | ||
| } | ||
|
|
||
| #' Energy Landscape | ||
| #' | ||
| #' @param slope vector with slopes | ||
| #' @param distance vector with distances | ||
| #' @param mass body mass of species (kg) | ||
| #' @param res numeric value (double) of the spatial resolution of the matrix | ||
| #' @param kcal (boolean) if to return the result in kCal (true) or J (false) | ||
| #' @return Vector with the energy cost of locomotion (EnergyScape) | ||
| energy <- function(slope, distance, mass, res, kcal = TRUE) { | ||
| .Call(`_enerscape_energy`, slope, distance, mass, res, kcal) | ||
| } | ||
|
|
||
| energyscape <- function(m, n = 4L, mass = 0, res = 0, kcal = TRUE) { | ||
| .Call(`_enerscape_energyscape`, m, n, mass, res, kcal) | ||
| #' Energy Landscape | ||
| #' | ||
| #' @param x matrix with values the elevation. | ||
| #' @param n (integer) number of neighbours to consider (either 4 or 8). | ||
| #' @param mass body mass of species (kg). | ||
| #' @param res numeric value (double) of the spatial resolution of the matrix. | ||
| #' @param kcal (boolean) if to return the result in kCal (true) or J (false). | ||
| #' @return Matrix with the energy cost of locomotion (EnergyScape). | ||
| energyscape <- function(x, n = 4L, mass = 0, res = 0, kcal = TRUE) { | ||
| .Call(`_enerscape_energyscape`, x, n, mass, res, kcal) | ||
| } | ||
|
|
||
| neighbours <- function(i, j, n, m) { | ||
| .Call(`_enerscape_neighbours`, i, j, n, m) | ||
| #' Neighbours | ||
| #' | ||
| #' @param i row index | ||
| #' @param j column index | ||
| #' @param n number of neighbours (4 or 8) | ||
| #' @param x matrix with values | ||
| #' @return Vector with values the neighours of x | ||
| neighbours <- function(i, j, n, x) { | ||
| .Call(`_enerscape_neighbours`, i, j, n, x) | ||
| } | ||
|
|
||
| slope <- function(dem, center, res) { | ||
| .Call(`_enerscape_slope`, dem, center, res) | ||
| #' Slopes | ||
| #' | ||
| #' @param x matrix with values | ||
| #' @param center numeric value (double) with the value of the focal cell | ||
| #' @param res numeric value (double) of the spatial resolution of the matrix | ||
| #' @return Vector with values the slopes (degrees) between x and center | ||
| slope <- function(x, center, res) { | ||
| .Call(`_enerscape_slope`, x, center, res) | ||
| } | ||
|
|
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