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Eugene Katrukha edited this page Apr 4, 2023
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The 3D dataset rendering happens using BigVolumeViewer (or actually its modified version). It has a lot in common with BDV, including basic navigation.
If after loading a dataset all you can see is a black cube, a standard way to proceed is to adjust
Brightness and color (and opacity) using shortcut S.
Once you see your dataset, to manipulate it in 3D, start with (similar to BDV):
- Left Mouse button drag anywhere on the canvas to rotate the volume.
- Right Mouse button anywhere on the canvas to translate the volume.
- Use ⌃ Ctrl + ⇧ Shift + Mouse Wheel, or ↑ Up and ↓ Down keys to zoom in and out.
Developed in Cell Biology group of Utrecht University.
Check out Updates history. The plugin and this wiki are under constant development.
E-mail for any questions, feedback, errors or suggestion
or tag @ekatrukha at image.sc forum.