Extract common functionality from SINDy to _BaseSINDy
#1631
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| name: CI | |
| on: | |
| push: | |
| branches: | |
| - master | |
| pull_request: | |
| branches: | |
| - master | |
| jobs: | |
| linting: | |
| name: Linting | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up Python | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: "3.9" | |
| - name: Linting | |
| run: | | |
| pip install pre-commit | |
| pre-commit run --all-files | |
| build: | |
| name: Build | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up Python | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: "3.9" | |
| - name: build | |
| run: pip install . | |
| - name: test import | |
| run: python -c "import pysindy" | |
| docs: | |
| name: Docs | |
| runs-on: ubuntu-latest | |
| strategy: | |
| fail-fast: false | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: "Set up Python" | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: "3.10" | |
| - name: Install doc dependencies | |
| run: | | |
| sudo apt-get update -y | |
| sudo apt-get install pandoc | |
| sudo apt-get update -y | |
| pip install -e .[docs,cvxpy,miosr,sbr] | |
| - name: Build docs | |
| run: | | |
| cd docs | |
| python -m sphinx -T -E -W -b html -d _build/doctrees . _build/html | |
| tests: | |
| name: Tests | |
| needs: linting | |
| runs-on: ubuntu-latest | |
| strategy: | |
| fail-fast: false | |
| max-parallel: 4 | |
| matrix: | |
| python-version: ["3.9", "3.11"] | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install dependencies | |
| run: | | |
| pip install --upgrade pip | |
| pip install .[dev,miosr,cvxpy,sbr] | |
| - name: Test with pytest | |
| run: | | |
| coverage run --source=pysindy -m pytest test -m "notebooks or not notebooks" && coverage xml | |
| - name: Upload coverage to Codecov | |
| uses: codecov/codecov-action@v3 | |
| with: | |
| token: ${{ secrets.CODECOV_TOKEN }} | |
| file: ./coverage.xml | |
| - uses: actions/cache@v3 | |
| with: | |
| path: ~/.cache/pip | |
| key: ${{ runner.os }}-pip-${{ hashFiles('**/requirements-dev.txt') }} | |
| restore-keys: | | |
| ${{ runner.os }}-pip- |