U19 Data Sharing Portal (USArhythms, aABC)

Centralised Portal aims to warehouse meta-data about shared research, including indexing, searching and pointers to code/visualization tools

Production Deployments:

• https://usarhythms.ucsd.edu/ (USArhythms U19 Portal)
• https://highandlow.dk.ucsd.edu/ (aABC U19 Portal)

Steps for setup:

1. Create VM running NGINX
2. Create python virtual environment on webserver (outside of NGINX document root)
3. Setup gunicorn (see ref below for Ubuntu 22.04)
4. Point DNS A record to web server and add TLS certificate (see ref2 below)
5. Create/edit local_settings.py to connect to local database
6. Modify core/settings.py for current domain

ref: https://www.digitalocean.com/community/tutorials/how-to-set-up-django-with-postgres-nginx-and-gunicorn-on-ubuntu-22-04

ref2: https://www.digitalocean.com/community/tutorials/how-to-secure-nginx-with-let-s-encrypt-on-ubuntu-22-04

Features

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• Permits user login to data sharing portal
• Provides user input form for experimental meta-data
• Provides user search form for locating previously-entered data

Future goals

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• Add basic visualizations for common data formats
• Add API for external/automated experimental data additions

Contribute

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[Issue Tracker] (https://github.com/drinehart1/USArhythms/issues)

[Source Code] (https://github.com/drinehart1/USArhythms)

Support

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If you are having issues, please let me know. Duane Rinehart - [email protected]

License

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The project is licensed under the MIT license.