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LanceDB - Remove Orphaned Chunks #1620

Merged
merged 149 commits into from
Nov 6, 2024
Merged

LanceDB - Remove Orphaned Chunks #1620

merged 149 commits into from
Nov 6, 2024

Commits on Jul 16, 2024

  1. Add tests for LanceDB chunking and merging functionality 

    Signed-off-by: Marcel Coetzee <[email protected]>
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    Pipboyguy committed Jul 16, 2024
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  2. Merge branch 'refs/heads/devel' into 1587-lancedb-support-efficient-u… 

    …pdate-strategy-for-chunked-documents
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    Pipboyguy committed Jul 16, 2024
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Commits on Jul 17, 2024

  1. Merge branch 'refs/heads/devel' into 1587-lancedb-support-efficient-u… 

    …pdate-strategy-for-chunked-documents
    @Pipboyguy
    Pipboyguy committed Jul 17, 2024
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Commits on Jul 18, 2024

  1. Merge branch 'refs/heads/devel' into 1587-lancedb-support-efficient-u… 

    …pdate-strategy-for-chunked-documents
    @Pipboyguy
    Pipboyguy committed Jul 18, 2024
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  2. Add TSplitter type alias for LanceDB document splitting function 

    Signed-off-by: Marcel Coetzee <[email protected]>
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    Pipboyguy committed Jul 18, 2024
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  3. Refine typing for chunks 

    Signed-off-by: Marcel Coetzee <[email protected]>
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    Pipboyguy committed Jul 18, 2024
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Commits on Jul 19, 2024

  1. Merge branch 'refs/heads/devel' into 1587-lancedb-support-efficient-u… 

    …pdate-strategy-for-chunked-documents
    @Pipboyguy
    Pipboyguy committed Jul 19, 2024
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  2. Add type definitions for chunk splitter function and related types 

    Signed-off-by: Marcel Coetzee <[email protected]>
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    Pipboyguy committed Jul 19, 2024
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  3. Remove unused ChunkInputT, ChunkOutputT, and TSplitter type definitions 

    Signed-off-by: Marcel Coetzee <[email protected]>
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    Pipboyguy committed Jul 19, 2024
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Commits on Jul 21, 2024

  1. Implement efficient update strategy for chunked documents in LanceDB 

    Signed-off-by: Marcel Coetzee <[email protected]>
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    Pipboyguy committed Jul 21, 2024
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  2. Implement efficient update strategy for chunked documents in LanceDB 

    Signed-off-by: Marcel Coetzee <[email protected]>
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    Pipboyguy committed Jul 21, 2024
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  3. Refactor LanceDB client and tests for improved readability and type s… 

    …afety

Signed-off-by: Marcel Coetzee <[email protected]>
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    Pipboyguy committed Jul 21, 2024
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  4. Linting 

    Signed-off-by: Marcel Coetzee <[email protected]>
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    Pipboyguy committed Jul 21, 2024
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Commits on Jul 23, 2024

  1. Merge branch 'refs/heads/devel' into 1587-lancedb-support-efficient-u… 

    …pdate-strategy-for-chunked-documents
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    Pipboyguy committed Jul 23, 2024
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Commits on Jul 24, 2024

  1. Merge branch 'refs/heads/devel' into 1587-lancedb-support-efficient-u… 

    …pdate-strategy-for-chunked-documents
    @Pipboyguy
    Pipboyguy committed Jul 24, 2024
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Commits on Jul 25, 2024

  1. Merge branch 'refs/heads/devel' into 1587-lancedb-support-efficient-u… 

    …pdate-strategy-for-chunked-documents
    @Pipboyguy
    Pipboyguy committed Jul 25, 2024
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Commits on Jul 27, 2024

  1. Add document_id parameter to lancedb_adapter and update merge logic 

    Signed-off-by: Marcel Coetzee <[email protected]>
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Commits on Jul 29, 2024

  1. Merge remote-tracking branch 'origin/devel' into 1587-lancedb-support… 

    …-efficient-update-strategy-for-chunked-documents
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    Pipboyguy committed Jul 29, 2024
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  2. Remove resolved comments 

    Signed-off-by: Marcel Coetzee <[email protected]>
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  3. Implement efficient orphan removal for chunked documents in LanceDB 

    Signed-off-by: Marcel Coetzee <[email protected]>
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    Pipboyguy committed Jul 29, 2024
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Commits on Jul 30, 2024

  1. Merge branch 'refs/heads/devel' into 1587-lancedb-support-efficient-u… 

    …pdate-strategy-for-chunked-documents
    @Pipboyguy
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  2. Implement efficient update strategy for chunked documents in LanceDB 

    Signed-off-by: Marcel Coetzee <[email protected]>
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    Pipboyguy committed Jul 30, 2024
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  3. Add test for removing orphaned records in LanceDB 

    Signed-off-by: Marcel Coetzee <[email protected]>
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    Pipboyguy committed Jul 30, 2024
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  4. Update LanceDB orphaned records removal test for chunked documents 

    Signed-off-by: Marcel Coetzee <[email protected]>
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  5. Set test pipeline as dev mode 

    Signed-off-by: Marcel Coetzee <[email protected]>
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    Pipboyguy committed Jul 30, 2024
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  6. Fix write disposition check in LanceDBRemoveOrphansJob execute method 

    Signed-off-by: Marcel Coetzee <[email protected]>
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Commits on Jul 31, 2024

  1. Merge branch 'refs/heads/devel' into 1587-lancedb-support-efficient-u… 

    …pdate-strategy-for-chunked-documents
    @Pipboyguy
    Pipboyguy committed Jul 31, 2024
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  2. Add FollowupJob trait to LoadLanceDBJob 

    Signed-off-by: Marcel Coetzee <[email protected]>
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    Pipboyguy committed Jul 31, 2024
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  3. Fix file type 

    Signed-off-by: Marcel Coetzee <[email protected]>
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  4. Fix file typing 

    Signed-off-by: Marcel Coetzee <[email protected]>
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    Pipboyguy committed Jul 31, 2024
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  5. Add test for removing orphaned records in LanceDB root table 

    Signed-off-by: Marcel Coetzee <[email protected]>
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    Pipboyguy committed Jul 31, 2024
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  6. Enhance LanceDB test to cover nested child removal and update scenarios 

    Signed-off-by: Marcel Coetzee <[email protected]>
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Commits on Aug 1, 2024

  1. Merge branch 'refs/heads/devel' into 1587-lancedb-support-efficient-u… 

    …pdate-strategy-for-chunked-documents
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    Pipboyguy committed Aug 1, 2024
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  2. Use doc id hint for top level tables 

    Signed-off-by: Marcel Coetzee <[email protected]>
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  3. Only join on join columns for orphan removal job 

    Signed-off-by: Marcel Coetzee <[email protected]>
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    Pipboyguy committed Aug 1, 2024
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  4. Add ollama to supported embedding providers and test orphaned record … 

    …removal with embeddings

Signed-off-by: Marcel Coetzee <[email protected]>
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Commits on Aug 2, 2024

  1. Merge branch 'refs/heads/devel' into 1587-lancedb-support-efficient-u… 

    …pdate-strategy-for-chunked-documents
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  2. Add merge_key to document resource for efficient updates in LanceDB 

    Signed-off-by: Marcel Coetzee <[email protected]>
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  3. Formatting 

    Signed-off-by: Marcel Coetzee <[email protected]>
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  4. Set default file size to 128MB 

    Signed-off-by: Marcel Coetzee <[email protected]>
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    Pipboyguy committed Aug 2, 2024
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Commits on Aug 3, 2024

  1. Merge branch 'refs/heads/devel' into 1587-lancedb-support-efficient-u… 

    …pdate-strategy-for-chunked-documents
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    Pipboyguy committed Aug 3, 2024
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  2. Only use parquet loader file formats 

    Signed-off-by: Marcel Coetzee <[email protected]>
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Commits on Aug 4, 2024

  1. Import pyarrow.parquet 

    Signed-off-by: Marcel Coetzee <[email protected]>
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  2. Remove recommended file size from LanceDB destination capabilities 

    Signed-off-by: Marcel Coetzee <[email protected]>
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    Pipboyguy committed Aug 4, 2024
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  3. Update LanceDB client to use more efficient batch processing methods … 

    …on loading for Load Jobs

Signed-off-by: Marcel Coetzee <[email protected]>
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Commits on Aug 5, 2024

  1. Refactor unique identifier handling for LanceDB tables 

    Signed-off-by: Marcel Coetzee <[email protected]>
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  2. Optimize UUID column generation for LanceDB tables 

    Signed-off-by: Marcel Coetzee <[email protected]>
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  3. Refactor LanceDBClient to use string type hints for Table 

    Signed-off-by: Marcel Coetzee <[email protected]>
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  4. Minor refactor 

    Signed-off-by: Marcel Coetzee <[email protected]>
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  5. Implement efficient schema update with Nullability support 

    Signed-off-by: Marcel Coetzee <[email protected]>
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    Pipboyguy committed Aug 5, 2024
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  6. Optimize orphaned chunks removal for large datasets 

    Signed-off-by: Marcel Coetzee <[email protected]>
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    Pipboyguy committed Aug 5, 2024
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Commits on Aug 6, 2024

  1. Projection pushdown 

    Signed-off-by: Marcel Coetzee <[email protected]>
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  2. Format 

    Signed-off-by: Marcel Coetzee <[email protected]>
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  3. Prevent primary key and document ID hint conflict in merge disposition 

    Signed-off-by: Marcel Coetzee <[email protected]>
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    Pipboyguy committed Aug 6, 2024
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Commits on Aug 7, 2024

  1. Add recommended file size for LanceDB destination 

    Signed-off-by: Marcel Coetzee <[email protected]>
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  2. Improve comment clarity for projection push-down in LanceDB 

    Signed-off-by: Marcel Coetzee <[email protected]>
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  3. Merge branch 'devel' into 1587-lancedb-support-efficient-update-strat… 

    …egy-for-chunked-documents

# Conflicts:
#	dlt/destinations/impl/lancedb/lancedb_client.py
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  4. Update to new load interface 

    Signed-off-by: Marcel Coetzee <[email protected]>
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Commits on Aug 8, 2024

  1. Remove unnecessary LanceDBLoadJob attributes 

    Signed-off-by: Marcel Coetzee <[email protected]>
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  2. Change instance attributes to run method as variables 

    Signed-off-by: Marcel Coetzee <[email protected]>
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Commits on Aug 9, 2024

  1. Merge branch 'devel' into 1587-lancedb-support-efficient-update-strat… 

    …egy-for-chunked-documents
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  2. Schedule follow up refernce job 

    Signed-off-by: Marcel Coetzee <[email protected]>
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Commits on Aug 10, 2024

  1. Add follow up lancedb remove orphan job skeleron 

    Signed-off-by: Marcel Coetzee <[email protected]>
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  2. Write empty follow up file 

    Signed-off-by: Marcel Coetzee <[email protected]>
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  3. Write parquet 

    Signed-off-by: Marcel Coetzee <[email protected]>
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  4. Add support for reference file format in LanceDB destination 

    Signed-off-by: Marcel Coetzee <[email protected]>
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  5. Handle parent table name resolution if it doesn't exist in Lance db r… 

    …emove orphan job

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Commits on Aug 12, 2024

  1. Merge branch 'devel' into 1587-lancedb-support-efficient-update-strat… 

    …egy-for-chunked-documents
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Commits on Aug 14, 2024

  1. Merge branch 'devel' into 1587-lancedb-support-efficient-update-strat… 

    …egy-for-chunked-documents
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Commits on Aug 15, 2024

  1. Refactor specialised orphan follow up job back to reference job 

    Signed-off-by: Marcel Coetzee <[email protected]>
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Commits on Aug 16, 2024

  1. Merge branch 'devel' into 1587-lancedb-support-efficient-update-strat… 

    …egy-for-chunked-documents
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Commits on Aug 17, 2024

  1. Merge branch 'devel' into 1587-lancedb-support-efficient-update-strat… 

    …egy-for-chunked-documents
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  2. Refactor orphan removal for chunked documents 

    Signed-off-by: Marcel Coetzee <[email protected]>
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Commits on Aug 18, 2024

  1. Fix dlt system table check for name instead of object 

    Signed-off-by: Marcel Coetzee <[email protected]>
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  2. Implement staging methods 

    Signed-off-by: Marcel Coetzee <[email protected]>
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Commits on Aug 19, 2024

  1. Override staging client methods 

    Signed-off-by: Marcel Coetzee <[email protected]>
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  2. Docs 

    Signed-off-by: Marcel Coetzee <[email protected]>
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  3. Merge branch 'devel' into 1587-lancedb-support-efficient-update-strat… 

    …egy-for-chunked-documents
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  4. Merge branch 'devel' into 1705-lancedb-orphan-removal-via-staging-del… 

    …etion-inserts
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Commits on Aug 20, 2024

  1. Override staging client methods 

    Signed-off-by: Marcel Coetzee <[email protected]>
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  2. Delete with inserts 

    Signed-off-by: Marcel Coetzee <[email protected]>
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  3. Keep with batch reader 

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Commits on Aug 21, 2024

  1. Merge branch 'devel' into 1705-lancedb-orphan-removal-via-staging-del… 

    …etion-inserts
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Commits on Aug 22, 2024

  1. Merge branch 'devel' into 1587-lancedb-support-efficient-update-strat… 

    …egy-for-chunked-documents
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  2. Remove Lancedb client's staging implementation 

    Signed-off-by: Marcel Coetzee <[email protected]>
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  3. Insert in memory arrow table. This will be optimized 

    Signed-off-by: Marcel Coetzee <[email protected]>
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Commits on Aug 26, 2024

  1. Merge branch 'devel' into 1705-lancedb-orphan-removal-via-staging-del… 

    …etion-inserts
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  2. Rename classes to the new job implementation classes 

    Signed-off-by: Marcel Coetzee <[email protected]>
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  3. Use namedtuple for table chain to improve readability 

    Signed-off-by: Marcel Coetzee <[email protected]>
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  4. Remove orphans by loading all ancestor IDs simultaneously 

    Signed-off-by: Marcel Coetzee <[email protected]>
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  5. Fix doc_id adapter 

    Signed-off-by: Marcel Coetzee <[email protected]>
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  6. Fix doc_id adapter 

    Signed-off-by: Marcel Coetzee <[email protected]>
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  7. Revert to previous 

    Signed-off-by: Marcel Coetzee <[email protected]>
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Commits on Aug 27, 2024

  1. Merge branch 'devel' into 1705-lancedb-orphan-removal-via-staging-del… 

    …etion-inserts
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  2. Revert "Remove orphans by loading all ancestor IDs simultaneously" 

    This reverts commit 06e04d9.
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  3. Remove doc_id hint 

    Signed-off-by: Marcel Coetzee <[email protected]>
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  4. Infer merge key if not supplied from provided primary key 

    Signed-off-by: Marcel Coetzee <[email protected]>
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  5. Remove unused utility functions 

    Signed-off-by: Marcel Coetzee <[email protected]>
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  6. Remove LanceDB doc ID hints and use schema normalizer 

    Signed-off-by: Marcel Coetzee <[email protected]>
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  7. LanceDB writes strange code 

    Signed-off-by: Marcel Coetzee <[email protected]>
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  8. Minor Formatting 

    Signed-off-by: Marcel Coetzee <[email protected]>
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Commits on Aug 28, 2024

  1. Merge branch 'devel' into remove-lancedb-doc-id-hints

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  2. Support compound primary and merge keys 

    Signed-off-by: Marcel Coetzee <[email protected]>
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  3. Remove old comment 

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Commits on Aug 29, 2024

  1. Merge branch 'devel' into remove-lancedb-doc-id-hints

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  2. - Change default vector column name to "vector" to conform with lance… 

    …db standard

- Add search tests with tantivy as search engine

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  3. Format and fix linting 

    Signed-off-by: Marcel Coetzee <[email protected]>
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  4. Add custom embedding function registration test 

    Signed-off-by: Marcel Coetzee <[email protected]>
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  5. Spawn process in test to make sure registry can be deserialized from … 

    …arrow files

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  6. Simplify null string handling 

    Signed-off-by: Marcel Coetzee <[email protected]>
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Commits on Aug 30, 2024

  1. Change NULL string replacement with random string, doc clarification 

    Signed-off-by: Marcel Coetzee <[email protected]>
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Commits on Aug 31, 2024

  1. Merge branch 'devel' into remove-lancedb-doc-id-hints

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  2. Update default vector column name in docs 

    Signed-off-by: Marcel Coetzee <[email protected]>
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Commits on Sep 2, 2024

  1. Merge branch 'devel' into remove-lancedb-doc-id-hints

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  2. Set remove_orphans flag to False on tests that don't require it 

    Signed-off-by: Marcel Coetzee <[email protected]>
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  3. Merge branch '1765-lancedb-destination-cant-query-generated-tables' i… 

    …nto remove-lancedb-doc-id-hints

# Conflicts:
#	dlt/destinations/impl/lancedb/lancedb_client.py
#	docs/website/docs/dlt-ecosystem/destinations/lancedb.md
#	tests/load/lancedb/test_pipeline.py
#	tests/load/lancedb/utils.py
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  4. Implement starter arrow string placeholder function 

    Signed-off-by: Marcel Coetzee <[email protected]>
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  5. Add test for empty arrow string element vectorised replacement utilit… 

    …y function

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  6. Handle NULL values in addition to empty strings in arrow substitution… 

    … method

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  7. More efficient empty value replacement with canonical arrow usage 

    Signed-off-by: Marcel Coetzee <[email protected]>
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  8. Format 

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  9. Bump pyarrow version 

    Signed-off-by: Marcel Coetzee <[email protected]>
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  10. Use pa.nulls instead of [None]*len 

    Signed-off-by: Marcel Coetzee <[email protected]>
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  11. Update tests 

    Signed-off-by: Marcel Coetzee <[email protected]>
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  12. Invert remove orphans flag 

    Signed-off-by: Marcel Coetzee <[email protected]>
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  13. Implement root table orphan deletion, only integer doc_ids 

    Signed-off-by: Marcel Coetzee <[email protected]>
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  14. Cater for string ids as well in doc_id removal process 

    Signed-off-by: Marcel Coetzee <[email protected]>
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  15. Fix test with wrong primary key 

    Signed-off-by: Marcel Coetzee <[email protected]>
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  16. Just send list of ids as is. don't pc.compute on client end 

    Signed-off-by: Marcel Coetzee <[email protected]>
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  17. Extract schema matching into utils 

    Signed-off-by: Marcel Coetzee <[email protected]>
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  18. Add utils 

    Signed-off-by: Marcel Coetzee <[email protected]>
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  19. Pass all tests 

    Signed-off-by: Marcel Coetzee <[email protected]>
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  20. Minor format and cleanup 

    Signed-off-by: Marcel Coetzee <[email protected]>
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  21. Merge branch 'remove-lancedb-doc-id-hints' into 1587-lancedb-support-… 

    …efficient-update-strategy-for-chunked-documents

# Conflicts:
#	dlt/destinations/impl/lancedb/lancedb_adapter.py
#	tests/load/lancedb/test_merge.py
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Commits on Sep 3, 2024

  1. Docs 

    Signed-off-by: Marcel Coetzee <[email protected]>
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Commits on Sep 5, 2024

  1. Merge branch 'devel' into 1587-lancedb-support-efficient-update-strat… 

    …egy-for-chunked-documents

# Conflicts:
#	dlt/destinations/impl/lancedb/lancedb_client.py
#	docs/website/docs/dlt-ecosystem/destinations/lancedb.md
#	poetry.lock
#	tests/load/lancedb/test_pipeline.py
#	tests/load/lancedb/utils.py
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  2. Amend replace test to test with large number of records to catch race… 

    … conditions with replace disposition

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  3. Fix replace race conditions by delegating truncation to dlt 

    Signed-off-by: Marcel Coetzee <[email protected]>
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Commits on Sep 6, 2024

  1. Merge branch 'devel' into 1587-lancedb-support-efficient-update-strat… 

    …egy-for-chunked-documents
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Commits on Sep 8, 2024

  1. Merge branch 'devel' into 1587-lancedb-support-efficient-update-strat… 

    …egy-for-chunked-documents

# Conflicts:
#	poetry.lock
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  2. Update lock file 

    Signed-off-by: Marcel Coetzee <[email protected]>
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Commits on Sep 24, 2024

  1. Merge branch 'devel' into 1587-lancedb-support-efficient-update-strat… 

    …egy-for-chunked-documents

# Conflicts:
#	dlt/destinations/impl/lancedb/factory.py
#	dlt/destinations/impl/lancedb/lancedb_client.py
#	dlt/destinations/impl/lancedb/schema.py
#	poetry.lock
#	tests/load/lancedb/test_pipeline.py
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  2. Refactor type mapping and schema handling in LanceDB client 

    Signed-off-by: Marcel Coetzee <[email protected]>
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  3. Change 'complex' column type to 'json' in LanceDB client 

    Signed-off-by: Marcel Coetzee <[email protected]>
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  4. update lock file 

    Signed-off-by: Marcel Coetzee <[email protected]>
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Commits on Nov 5, 2024

  1. fixes generating lancedb literals

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  2. verifies merge key early, fixes column override in adapters

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  3. Merge branch 'devel' into 1587-lancedb-support-efficient-update-strat… 

    …egy-for-chunked-documents
    @rudolfix
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Commits on Nov 6, 2024

  1. fixes linting errors

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