getresults-astm

ASTM interface using python-astm that takes dispatchers from getresults, 'edc and dmis. See also module getresults.

As a django management command:

import sys

from django.core.management.base import BaseCommand

# write your own dispatcher, see getresults.astm.dispatchers
from getresults_astm.dispatchers import Dispatcher

from astm.server import Server


class Command(BaseCommand):
    help = 'Load data from a folder containing panels.csv, utestids.csv, panel_items.csv'

    def add_arguments(self, parser):
        parser.add_argument('host', nargs=1, type=str)
        parser.add_argument('port', nargs=1, type=str)

    def handle(self, *args, **options):
        host = str(options['host'][0]) or 'localhost'
        port = int(options['port'][0]) or 20581
        sys.stdout.write('Connecting to {} on port {} ...'.format(host, port))
        server = Server(host=host, port=port, dispatcher=Dispatcher)
        server.serve_forever()

Run the server

# host = '192.168.1.1'
# port = 20851
python manage.py astm_server '192.168.1.1' 20851

The sample message in the folder testdata folder is output from our implementation of Roche PSM.

The python-astm record classes are subclasses to accept data from PSM, which is rather incomplete in our deployment. For example, our implementation of PSM does not report birth date, gender ,etc. The testing panel is also not known by our implementation and just sends 'ALL'. Because of this we expect the order identifier to be in the ASTM output and matched to an existing order in the receiving database.