use shell: micromamba-shell

deeptools · Dec 6, 2023 · d22e8cd · d22e8cd
1 parent bcba0c6
commit d22e8cd
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Showing 2 changed files with 6 additions and 6 deletions.
diff --git a/.github/workflows/pylint.yml b/.github/workflows/pylint.yml
@@ -14,7 +14,6 @@ jobs:
         environment-name: HiCMatrix_env_ci
     - name: Analysing the code with pylint
       run: |
-        micromamba activate HiCMatrix_env_ci
         # Disable
         # C0103: Invalid name
         # C0114: Missing module docstring
@@ -32,3 +31,4 @@ jobs:
         # R1702: Too many nested blocks
         # R1728: Consider using a generator
         pylint --disable C0103,C0114,C0115,C0116,C0301,C0302,R0801,R0902,R0904,R0912,R0913,R0914,R0915,R1702,R1728 $(git ls-files '*.py')
+      shell: micromamba-shell {0}
diff --git a/.github/workflows/test.yml b/.github/workflows/test.yml
@@ -26,12 +26,12 @@ jobs:
         environment-name: HiCMatrix_env_ci
     - name: pip install
       run: |
-        micromamba activate HiCMatrix_env_ci
         python3 -m pip install .
+      shell: micromamba-shell {0}
     - name: Test HiCMatrix
       run: |
-        micromamba activate HiCMatrix_env_ci
         py.test hicmatrix/test/ --capture=sys
+      shell: micromamba-shell {0}
   test-osx:
     name: Test on OSX
     runs-on: macOS-latest
@@ -44,9 +44,9 @@ jobs:
         environment-name: HiCMatrix_env_ci
     - name: pip install
       run: |
-        micromamba activate HiCMatrix_env_ci
         python3 -m pip install .
+      shell: micromamba-shell {0}
     - name: Test HiCMatrix
       run: |
-        micromamba activate HiCMatrix_env_ci
-        py.test hicmatrix/test/ --capture=sys
+        py.test hicmatrix/test/ --capture=sys
+      shell: micromamba-shell {0}