Merge pull request #390 from deepanshs/djs/mon_py

rem mon py

docs/installation/requirements.rst

@@ -23,7 +23,6 @@ following operating systems:
 - `csdmpy>=0.6 <https://csdmpy.readthedocs.io/en/stable/>`_
 - `pydantic>=2.8 <https://pydantic-docs.helpmanual.io>`_
 - `nmrglue>=0.9 <https://nmrglue.readthedocs.io/>`_
-- monty>=2.0.4
 - typing-extensions>=3.7
 - numexpr>=2.8.4
 - psutil>=5.4.8

docs/requirements.txt

@@ -3,7 +3,6 @@ matplotlib>=3.3.3
 csdmpy>=0.6
 astropy>=5.1
 pydantic>=2.8
-monty>=2.0.4
 typing-extensions>=3.7
 lmfit>=1.0.2
 pandas>=1.1.3

environment-dev.yml

@@ -13,7 +13,6 @@ dependencies:
   - pandas>=1.1.3
   - pip
   - pip:
-      - monty>=2.0.4
       - csdmpy>=0.6
       - astropy>=5.1
       - pydantic>=2.8

environment-docs.yml

@@ -13,7 +13,6 @@ dependencies:
   - pandas>=1.1.3
   - pip
   - pip:
-      - monty>=2.0.4
       - csdmpy>=0.6
       - astropy>=5.1
       - pydantic>=2.8

environment.yml

@@ -15,7 +15,6 @@ dependencies:
       - matplotlib>=3.3.4
       - joblib>=1.0.0
       - pandas>=1.1.3
-      - monty>=2.0.4
       - csdmpy>=0.6
       - astropy>=5.1
       - pydantic>=2.8

requirements-dev.txt

@@ -4,7 +4,6 @@ matplotlib>=3.3.4
 csdmpy>=0.6
 astropy>=5.1
 pydantic>=2.8
-monty>=2.0.4
 typing-extensions>=3.7
 lmfit>=1.0.3
 pandas>=1.1.3

requirements.txt

@@ -4,7 +4,6 @@ matplotlib>=3.3.4
 csdmpy>=0.6
 astropy>=5.1
 pydantic>=2.8
-monty>=2.0.4
 typing-extensions>=3.7
 lmfit>=1.0.3
 pandas>=1.1.3

setup.py

@@ -373,7 +373,6 @@ def fftw_info(self):
         "numpy>=1.20",
         "csdmpy>=0.6",
         "pydantic>=2.8",
-        "monty>=2.0.4",
         "typing-extensions>=3.7",
         "psutil>=5.4.8",
         "joblib>=1.0.0",

src/mrsimulator/method/tests/lib_tests/test_methods.py

@@ -1,8 +1,8 @@
+import json
 from os import path
 
 import numpy as np
 import pytest
-from monty.serialization import loadfn
 from mrsimulator.method import Method
 from mrsimulator.method.lib import BlochDecaySpectrum
 from mrsimulator.method.lib import ThreeQ_VAS
@@ -11,7 +11,8 @@
 __email__ = "[email protected]"
 
 MODULE_DIR = path.dirname(path.abspath(__file__))
-TESTDATA = loadfn(path.join(MODULE_DIR, "test_data.json"))
+with open(path.join(MODULE_DIR, "test_data.json")) as f:
+    TESTDATA = json.load(f)
 
 MAS_DIM = {
     "count": 128,

src/mrsimulator/spin_system/isotope.py

@@ -1,9 +1,9 @@
 """Base Isotope class."""
+import json
 from os import path
 from typing import ClassVar
 from typing import Dict
 
-from monty.serialization import loadfn
 from pydantic.v1 import BaseModel
 from pydantic.v1 import validator
 
@@ -12,8 +12,12 @@
 
 MODULE_DIR = path.dirname(path.abspath(__file__))
 
-ISOTOPE_DATA = loadfn(path.join(MODULE_DIR, "isotope_data.json"))
-REFERENCE_DATA = loadfn(path.join(MODULE_DIR, "references.json"))
+with open(path.join(MODULE_DIR, "isotope_data.json")) as f:
+    ISOTOPE_DATA = json.load(f)
+
+with open(path.join(MODULE_DIR, "references.json")) as f:
+    REFERENCE_DATA = json.load(f)
+
 DEFAULT_ISOTOPE = {
     "spin_multiplicity": 2,
     "gyromagnetic_ratio": 0,

src/mrsimulator/tests/test_root_level_funcs.py

@@ -1,7 +1,7 @@
+import json
 import os
 
 import pytest
-from monty.serialization import loadfn
 from mrsimulator import __version__
 from mrsimulator import dict
 from mrsimulator import load
@@ -16,7 +16,8 @@
 
 
 MODULE_DIR = os.path.dirname(os.path.abspath(__file__))
-TEST_DATA = loadfn(os.path.join(MODULE_DIR, "test_data.json"))
+with open(os.path.join(MODULE_DIR, "test_data.json")) as f:
+    TEST_DATA = json.load(f)
 
 # mrsimulator save and load test