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doc lint

doc lint #163

Workflow file for this run

name: CI (wheels and sdist)
on:
push:
branches: ['rc*']
pull_request:
branches: ['rc*']
release:
types: [published]
jobs:
build-test:
runs-on: ubuntu-latest
steps:
- name: Checkout
uses: actions/checkout@v4
- name: setup python
uses: actions/setup-python@v5
with:
python-version: "3.10"
- name: Install system dependencies
run: sudo apt-get install --yes libopenblas-dev libfftw3-dev
- name: Install dependencies
run: |
python -m pip install --upgrade pip
python -m pip install pytest cython setuptools
python -m pip install -r requirements-dev.txt
- name: build sdist
run: python setup.py develop
- name: Test with pytest
run: pytest --cov=./ --cov-report=xml
- name: Upload coverage
uses: codecov/[email protected]
source-distribution:
needs: [build-test]
runs-on: ubuntu-latest
steps:
- name: Checkout
uses: actions/checkout@v4
- name: setup python
uses: actions/setup-python@v5
with:
python-version: "3.10"
- name: Install system dependencies
run: sudo apt-get install --yes libopenblas-dev libfftw3-dev
- name: build sdist
run: |
python -m pip install --upgrade pip
python -m pip install pytest cython setuptools
python -m pip install -r requirements-dev.txt
python setup.py sdist
- name: upload artifact
uses: actions/upload-artifact@v4
with:
name: sdist
path: "dist/*.tar.gz"
if-no-files-found: error
# - name: Publish to PyPI
# if: startsWith(github.ref, 'refs/tags/')
# env:
# TWINE_USERNAME: ${{ secrets.PYPI_USERNAME }}
# TWINE_PASSWORD: ${{ secrets.PYPI_PASSWORD }}
# run: |
# pip install twine
# twine upload --skip-existing dist/*.tar.gz
wheel-package:
needs: [build-test]
runs-on: ${{ matrix.os }}
env:
MACOSX_DEPLOYMENT_TARGET: "12.0"
CIBW_BUILD_VERBOSITY: "1"
CIBW_BEFORE_ALL_MACOS: "brew install fftw openblas"
CIBW_BEFORE_ALL_LINUX: "yum -y install openblas-devel fftw-devel"
CIBW_BUILD: "${{ matrix.cibw.build || '*' }}"
CIBW_SKIP: "${{ matrix.cibw.skip || 'cp36* cp37* cp38*' }}"
CIBW_MANYLINUX_X86_64_IMAGE: "${{ matrix.cibw.manylinux_image }}"
CIBW_MANYLINUX_I686_IMAGE: "${{ matrix.cibw.manylinux_image }}"
CIBW_MANYLINUX_AARCH64_IMAGE: "${{ matrix.cibw.manylinux_image }}"
CIBW_ARCHS_LINUX: "${{ matrix.cibw.arch || 'auto' }}"
CIBW_ARCHS_MACOS: "${{ matrix.cibw.arch || 'auto' }}"
CIBW_ENVIRONMENT_WINDOWS: "LIB='C:\\Miniconda\\Library\\lib' INCLUDE='C:\\Miniconda\\Library\\include;C:\\Miniconda\\Library\\include\\openblas'"
CIBW_REPAIR_WHEEL_COMMAND_WINDOWS: >-
delvewheel repair
-v
--add-path=C:/Miniconda/Library/bin
--wheel-dir={dest_dir}
{wheel}
# CIBW_BEFORE_TEST_LINUX: |
# yum -y install libjpeg-devel zlib1g-devel
# python -m pip install "pillow==8.4"
# python -m pip install -r requirements.txt
# CIBW_BEFORE_TEST: |
# python -m pip install -U pip
# python -m pip install -r requirements.txt
# CIBW_TEST_REQUIRES: "pytest"
# CIBW_TEST_COMMAND: |
# python -c "import mrsimulator"
# python -c "from mrsimulator import Site, Coupling, SpinSystem, Simulator"
# python -c "from mrsimulator.method.lib import Method1D, Method2D"
strategy:
fail-fast: false
matrix:
include:
- os: macos-12
name: mac 64-bit x86_64
cibw:
build: "cp3*"
- os: macos-14
name: mac 64-bit arm64
cibw:
arch: arm64
build: "cp3*"
- os: ubuntu-latest
name: linux 64-bit x86_64
cibw:
build: "cp3*manylinux_x86_64"
manylinux_image: manylinux2014
# - os: ubuntu-latest
# name: linux 32-bit i686
# cibw:
# build: "cp3*manylinux_i686"
# manylinux_image: manylinux2010
# - os: ubuntu-latest
# name: manylinux_aarch64
# cibw:
# build: "cp3*"
# manylinux_image: manylinux2014
# arch: aarch64
# - os: windows-latest
# name: win32
# architecture: x86
# cibw:
# build: "cp3*win32"
# - os: windows-2016
# name: win32-pypy
# architecture: x86
# cibw:
# build: "pp*win32"
- os: windows-latest
name: windows 64-bit AMD64
cibw:
build: "cp3*win_amd64"
steps:
- name: Checkout
uses: actions/checkout@v4
- name: Set up Python
uses: actions/setup-python@v5
with:
python-version: "3.10"
architecture: ${{ matrix.architecture }}
- name: customize mac-arm-64
if: contains(matrix.os, 'macos') && matrix.cibw.arch
run: |
echo 'MACOSX_DEPLOYMENT_TARGET=14' >> "$GITHUB_ENV"
# sudo xcode-select -switch /Applications/Xcode_13.1.app
# echo 'SDKROOT=/Applications/Xcode_13.1.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX11.1.sdk' >> "$GITHUB_ENV"
# echo 'MACOSX_DEPLOYMENT_TARGET=11.1' >> "$GITHUB_ENV"
- name: Set up QEMU
if: startsWith(matrix.os, 'ubuntu') && matrix.cibw.arch
uses: docker/setup-qemu-action@v3
with:
platforms: arm64
- name: customize aarch64
if: contains(matrix.cibw.arch, 'aarch64')
# install fftw-devel and openblas-devel from epel-7
run: |
echo '${{ matrix.cibw.arch }}'
echo 'CIBW_BEFORE_ALL_LINUX=yum -y install epel-release && yum -y install openblas-devel fftw-devel' >> "$GITHUB_ENV"
- name: Install mac-os Dependencies
if: startsWith(matrix.os, 'mac')
run: |
python -m pip install --upgrade delocate
- name: Install linux Dependencies
if: startsWith(matrix.os, 'ubuntu')
run: |
python -m pip install --upgrade auditwheel
- name: Install windows Dependencies
if: startsWith(matrix.os, 'windows')
run: |
python -m pip install --upgrade delvewheel
C:\Miniconda\Scripts\conda install -c conda-forge openblas fftw
- name: Install Python Dependencies
run: |
python -m pip install --upgrade setuptools pip wheel cython
python -m pip install --upgrade cibuildwheel
- name: show environment
run: |
pip freeze
- name: list target wheels
run: |
python -m cibuildwheel . --print-build-identifiers
- name: Build wheels
run: |
python -m cibuildwheel .
- uses: actions/upload-artifact@v4
with:
name: wheels-${{ matrix.name }}
path: "wheelhouse/*"
if-no-files-found: error