InSilico SCReening for SC2 guides

Please refer to wiki for details of the pipeline.

Create the conda environment `isscr`

conda env update --name isscr -f env.yml

paste - - < guides.fa  | awk '{print $2, substr($1,2)}' | xargs -Ixx -P 8 bash -c "bash grep_kmer_counts.sh xx"

Name		Name	Last commit message	Last commit date
Latest commit History 22 Commits
isscrlib		isscrlib
rules		rules
.gitignore		.gitignore
LICENSE.txt		LICENSE.txt
README.md		README.md
Snakefile		Snakefile
config.yml		config.yml
env.yml		env.yml
setup.py		setup.py