This repository contains code and data for the paper A Random-Walk-Based Epidemiological Model by Andrew Chu, Greg Huber, Aaron McGeever, Boris Veytsman and David Yllanes.
- Manifest.toml - used to set up Julia environment
- Project.toml - used to set up Julia environment
- data - data files. ".jld" files are compatible with Julia. Additional data is provided in this Google Drive folder due to Github file size limits.
- R0-prediction - code for generation of R0 prediction figure
- Figure 1c - code for generating figure 1c
- Figure 3 - code for generating figure 3
- Figure 4 - code for generating figure 4
- Figure 5 - code for generating figure 5. Uses data from "Figure_5_data.jld" in data folder
- Figure 6 - Uses data located in the Google Drive folder.
- Figure 7 - Uses data located in the Google Drive folder.
- Table 1 - code for generating table 1
- Figure S2 - code for generating figure S2. Uses data from files beginning with "rg_ar_" in data folder
- Figures S3 - S5 - code for generating figures S3 - S5. Uses data located in the Google Drive folder.
- Iso-R0 Estimation - code for generating data for iso-R0 lines in figure 4
- Phase Diagram - code for generating data for phase diagram in figure 4
- Radius of Gyration and Attack Rate Calculation - code for calculating radius of gyration and attack rate data in figure 6.
- Cluster Simulation - code for simulating outbreaks and calculating the radius of gyration, cluster mass, and cluster surface points in figures 6 and 7.
- utils.jl - helper functions for Cluster Simulation.