Template adapted from the Bedford Lab at Fred Hutch
To build the website locally, clone the repo with:
git clone https://github.com/ctleelab/ctleelab.github.io.git
Then install necessary Ruby dependencies by running bundle install from within the root directory. After this, the site can be be built with:
bundle exec jekyll build
(If you are getting errors at this stage, it may be due to your version of bundle. Try gem uninstall bundler + gem install bundler -v 1.13.1.)
To view the site, run bundle exec jekyll serve and point a browser to http://localhost:4000/. More information on Jekyll can be found here.
To include projects, preprocessing scripts are necessary to clone project repos and update Jekyll metadata. This can be accomplished with:
ruby _scripts/update-and-preprocess.rb
python _scripts/genbib.py
Then jekyll build works as normal.
Another option is to automate building and testing with rake. First install the additional dependencies bundle config set with 'test', followed by bundle install.
Then the site can be built and tested with:
bundle exec rake ci
All source code in this repository, consisting of files with extensions .html, .css, .less, .rb or .js, is freely available under an MIT license, unless otherwise noted within a file. You're welcome to borrow / repurpose code to build your own site, but I would very much appreciate attribution and a link back to bedford.io from your about page.
The MIT License (MIT)
Copyright (c) 2013-2019 Trevor Bedford
Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the "Software"), to deal in the Software without restriction, including without limitation the rights to use, copy, modify, merge, publish, distribute, sublicense, and/or sell copies of the Software, and to permit persons to whom the Software is furnished to do so, subject to the following conditions:
The above copyright notice and this permission notice shall be included in all copies or substantial portions of the Software.
THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.