Create monthly-update.yml

.github/workflows/monthly-update.yml

@@ -0,0 +1,47 @@
+name: Monthly Update
+
+on:
+  schedule:
+    - cron: '0 0 25 * *'  # Runs at 00:00 on the 25th day of each month
+  workflow_dispatch:  # Allows manual triggering for testing
+
+jobs:
+  update:
+    runs-on: ubuntu-latest
+
+    steps:
+    - name: Checkout repository
+      uses: actions/checkout@v2
+
+    - name: Set up Python
+      uses: actions/setup-python@v2
+      with:
+        python-version: '3.x'
+
+    - name: Install dependencies
+      run: |
+        python -m pip install --upgrade pip
+        pip install -r www/python/src/requirements.txt
+
+    - name: Run fetch_wikipedia_genes
+      run: python www/python/src/fetch_wikipedia_genes.py
+
+    - name: Run generate_gmt
+      run: python www/python/src/generate_gmt.py
+
+    - name: Commit changes
+      run: |
+        git config --local user.email "[email protected]"
+        git config --local user.name "Your Name"
+        git add .
+        git commit -m "Monthly update: fetch genes and generate GMT"
+      env:
+        GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+
+    - name: Bump version and push
+      run: |
+        pip install bump2version
+        bump2version minor --tag
+        git push --follow-tags
+      env:
+        GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}