Quarto Publish #19029
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| on: | |
| workflow_dispatch: | |
| push: | |
| branches: main | |
| schedule: | |
| ## Run once every 10 minutes | |
| - cron: '*/10 * * * *' | |
| name: Quarto Publish | |
| jobs: | |
| build-deploy: | |
| runs-on: ubuntu-latest | |
| permissions: | |
| contents: write | |
| steps: | |
| - name: Check out repository | |
| uses: actions/checkout@v4 | |
| - name: Install system dependencies | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get install -y libcurl4-openssl-dev | |
| - name: Set up Quarto | |
| uses: quarto-dev/quarto-actions/setup@v2 | |
| - name: Set up R | |
| uses: r-lib/actions/setup-r@v2 | |
| - name: Cache R packages | |
| uses: actions/cache@v4 | |
| with: | |
| path: ${{ env.R_LIBS_USER }} | |
| key: ${{ runner.os }}-r-packages | |
| - name: Install R dependencies | |
| run: | | |
| pkgs <- c("ciw", "dplyr", "DT", "ggplot2", "patchwork", "tidyr", "knitr", "lubridate", "forcats", "remotes") | |
| pkgs <- unique(pkgs) | |
| pkgs <- pkgs[!sapply(pkgs, FUN = requireNamespace)] | |
| install.packages(pkgs) | |
| install.packages("cransays", repos = c("https://bisaloo.r-universe.dev", getOption("repos"))) | |
| shell: Rscript {0} | |
| - name: Session information | |
| run: | | |
| quarto --version | |
| Rscript --version | |
| - name: Render | |
| uses: quarto-dev/quarto-actions/render@v2 | |
| - name: Did output HTML files change? | |
| id: changed | |
| run: | | |
| git fetch origin gh-pages:gh-pages --depth=1 | |
| git checkout -f gh-pages | |
| publish=false | |
| for file in $(cd _site/; find . -name "*.html"); do | |
| echo "${file}:" | |
| diff -u -w "${file}" "_site/${file}" || publish=true | |
| done | |
| git checkout -f main | |
| echo "publish=${publish}" | |
| echo "publish=${publish}" >> "${GITHUB_OUTPUT}" | |
| - name: Publish | |
| if: ${{ steps.changed.outputs.publish == 'true' }} | |
| uses: quarto-dev/quarto-actions/publish@v2 | |
| with: | |
| render: "false" | |
| target: gh-pages | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} |