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pangolin v2.3.0
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@aineniamh aineniamh released this 17 Feb 17:47
· 490 commits to master since this release
v2.3.0
5e58f12

Release notes

  • Introduction of --alignment flag that outputs the aligned fasta file to the output directory rather than the tempdir.
  • Speed up of alignment step by switching of datafunk to gofasta, this dependency switched in the environment file (major release tagged as env will need updating with this one).
  • Now also piping minimap2 output to gofasta rather than creating an intermediate temp sam file.
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