rm the pysam dependency

cov-lineages · Apr 5, 2022 · 2bffc3d · 2bffc3d
1 parent 98c871f
commit 2bffc3d
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Showing 2 changed files with 1 addition and 2 deletions.
diff --git a/environment.yml b/environment.yml
@@ -10,7 +10,6 @@ dependencies:
   - python>=3.7
   - snakemake-minimal<=6.8.0
   - gofasta
-  - pysam==0.16.0.1
   - ucsc-fatovcf>=426
   - usher>=0.3.2
   - git-lfs

diff --git a/pangolin/utils/config.py b/pangolin/utils/config.py
@@ -76,4 +76,4 @@
 
 # Dependencies
 dependency_list = ["gofasta","minimap2","snakemake"]
-module_list = ["Bio","sklearn","pandas","joblib","pysam","pangoLEARN","constellations"]
+module_list = ["Bio","sklearn","pandas","joblib","pangoLEARN","constellations"]