Merge pull request #28 from jchodera/add-sobol

Added Sobol subrandom sampling approach to initialize particle positions

devtools/ci/after_sucess.sh

@@ -10,9 +10,10 @@ if [[ "$TRAVIS_BRANCH" != "master" ]]; then
 fi
 
 
-if [[ "2.7 3.3" =~ "$python" ]]; then
-    conda install --yes binstar
-    binstar -t $BINSTAR_TOKEN upload --force -u omnia -p openmmtools $HOME/miniconda/conda-bld/linux-64/${PACKAGENAME}-*
+if [[ "2.7 3.3 3.4" =~ "$python" ]]; then
+    conda install --yes --quiet binstar
+    BINSTAR_VERSION=`git describe 2> /dev/null || git rev-parse --short HEAD` # From http://wygoda.net/blog/getting-useful-git-revision-information/
+    binstar -t $BINSTAR_TOKEN upload -v $BINSTAR_VERSION -u omnia -p openmmtools-dev $HOME/miniconda/conda-bld/linux-64/${PACKAGENAME}-*
 fi
 
 if [[ "$python" != "2.7" ]]; then

openmmtools/mit_license.txt

@@ -0,0 +1,21 @@
+The MIT License (MIT)
+
+Copyright (c) 2014 John Burkardt
+
+Permission is hereby granted, free of charge, to any person obtaining a copy
+of this software and associated documentation files (the "Software"), to deal
+in the Software without restriction, including without limitation the rights
+to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+copies of the Software, and to permit persons to whom the Software is
+furnished to do so, subject to the following conditions:
+
+The above copyright notice and this permission notice shall be included in
+all copies or substantial portions of the Software.
+
+THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
+THE SOFTWARE.