chore: sort observations by highest gene expression #4006
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| name: Push Tests | |
| on: | |
| push: | |
| branches: | |
| - main | |
| pull_request: | |
| branches: | |
| - "**" | |
| env: | |
| JEST_ENV: prod | |
| CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }} | |
| jobs: | |
| lint: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - run: | | |
| git fetch --depth=1 origin +${{github.base_ref}} | |
| - name: Set up Python 3.12 | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: 3.12 | |
| - name: Node cache | |
| uses: actions/cache@v4 | |
| with: | |
| path: ~/.npm | |
| key: ${{ runner.os }}-node-${{ hashFiles('**/package-lock.json') }} | |
| restore-keys: | | |
| ${{ runner.os }}-node- | |
| - name: Run pre-commit checks | |
| uses: pre-commit/[email protected] | |
| - name: Install client dependencies | |
| run: | | |
| cd client | |
| npm install | |
| - name: Lint src with eslint | |
| working-directory: ./client | |
| run: | | |
| npm run lint | |
| - name: Install dev dependencies | |
| run: | | |
| cd server | |
| pip install -r requirements-dev.txt | |
| # We can't have mypy in the pre-commit hook without having it run on all files | |
| # in the repo, because (probably) the --all-files argument in pre-commit overrides | |
| # the more narrow specifying of files in pyproject.toml | |
| # TODO: Remove this if/when all files are mypy-compliant | |
| - name: Run mypy | |
| run: | | |
| mypy --config-file pyproject.toml | |
| unit-test: | |
| runs-on: ubuntu-latest | |
| timeout-minutes: 10 | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: Set up Python 3.12 | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: 3.12 | |
| - name: Python cache | |
| uses: actions/cache@v4 | |
| with: | |
| path: ~/.cache/pip | |
| key: ${{ runner.os }}-pip-${{ hashFiles('**/requirements*.txt') }} | |
| restore-keys: | | |
| ${{ runner.os }}-pip- | |
| - uses: actions/setup-node@v4 | |
| with: | |
| node-version-file: "client/.nvmrc" | |
| cache: "npm" | |
| cache-dependency-path: "client/package-lock.json" | |
| - name: Install dependencies | |
| run: make dev-env-server build-for-server-dev | |
| - name: Unit tests | |
| run: | | |
| make unit-test-server | |
| - name: Upload coverage reports to Codecov with GitHub Action | |
| uses: codecov/[email protected] | |
| with: | |
| root_dir: ../ | |
| flags: server,python,unitTest | |
| verbose: true | |
| commit_parent: false | |
| directory: server/ | |
| env: | |
| CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }} |