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Ivirshup/census builder spatial #1245

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@ivirshup ivirshup commented Jul 12, 2024

TODO

  • Update source datasets links to ones which use schema v5.1.0
  • Update builder
    • Don't include normalized layer
    • Figure out what set of genes to use
    • populate spatial collection
      • Add a scene per ingested dataset
    • Add obs_scene table
    • Add var_scene table
    • Filter out objects with .uns["spatial"]["is_single"]==False (current filtering code seems to rely only on columns in obs)
  • Tests
    • Check equivalence of written data to input anndata
      • loc
      • images

prathapsridharan and others added 30 commits June 7, 2024 15:59
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