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Support new format of MiSeq sample sheets #1144

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Support new format of MiSeq sample sheets #1144

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Commits on Jul 10, 2024

  1. Support new format of sample sheet

    @Donaim
    Donaim committed Jul 10, 2024
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Commits on Aug 7, 2024

  1. Factor out version 1 of sample sheet parser

    @Donaim
    Donaim committed Aug 7, 2024
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  2. Fix formatting in test_error_metrics_parser

    @Donaim
    Donaim committed Aug 7, 2024
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  3. Update .flake8 config

    @Donaim
    Donaim committed Aug 7, 2024
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  4. Update mypy config

    @Donaim
    Donaim committed Aug 7, 2024
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  5. Fix current sample sheet parser on version 1 

    Also remove the tests for v2.
    @Donaim
    Donaim committed Aug 7, 2024
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  6. Improve typing in sample_sheet_parser

    @Donaim
    Donaim committed Aug 7, 2024
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Commits on Aug 8, 2024

  1. Add multicsv to requirements.txt

    @Donaim
    Donaim committed Aug 8, 2024
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  2. Install multics for Singularity

    @Donaim
    Donaim committed Aug 8, 2024
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  3. Implement version recognition for sample sheet

    @Donaim
    Donaim committed Aug 8, 2024
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  4. Implement V2 sample sheet reader

    @Donaim
    Donaim committed Aug 8, 2024
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  5. Update usage of multicsv

    @Donaim
    Donaim committed Aug 8, 2024
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  6. Improve multicsv installation path

    @Donaim
    Donaim committed Aug 8, 2024
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  7. Improve sample sheet v2 verifier

    @Donaim
    Donaim committed Aug 8, 2024
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  8. Add more sample sheet tests

    @Donaim
    Donaim committed Aug 8, 2024
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  9. Remove Sequence from sample sheets

    @Donaim
    Donaim committed Aug 8, 2024
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Commits on Aug 21, 2024

  1. Add Sample_Plate field to sample sheet v2

    @Donaim
    Donaim committed Aug 21, 2024
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Commits on Sep 19, 2024

  1. Bump CI/github/upload-artifacts version

    @Donaim
    Donaim committed Sep 19, 2024
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  2. Install aligntools from PyPI

    @Donaim
    Donaim committed Sep 19, 2024
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