fixed the RelionMetadataExporter now requiring the image.h5 file

ccpem · Nov 7, 2024 · ebc749c · ebc749c
1 parent 4ff5d6d
commit ebc749c
Showing 1 changed file with 16 additions and 16 deletions.
diff --git a/src/roodmus/simulation/run_parakeet.py b/src/roodmus/simulation/run_parakeet.py
@@ -1116,6 +1116,22 @@ def simulate_image(
         config.config_filename, sample_file=config.sample_filename
     )
 
+    parakeet.simulate.exit_wave(
+        config.config_filename,
+        config.sample_filename,
+        exit_wave_file=config.exit_wave_filename,
+    )
+    parakeet.simulate.optics(
+        config.config_filename,
+        exit_wave_file=config.exit_wave_filename,
+        optics_file=config.optics_filename,
+    )
+    parakeet.simulate.image(
+        config.config_filename,
+        optics_file=config.optics_filename,
+        image_file=config.image_filename,
+    )
+
     # Write out the metadata if this is the first image in this
     # run_parakeet session or if overwrite requested
     if write_mtf:
@@ -1144,22 +1160,6 @@ def simulate_image(
                     )
                 )
 
-    parakeet.simulate.exit_wave(
-        config.config_filename,
-        config.sample_filename,
-        exit_wave_file=config.exit_wave_filename,
-    )
-    parakeet.simulate.optics(
-        config.config_filename,
-        exit_wave_file=config.exit_wave_filename,
-        optics_file=config.optics_filename,
-    )
-    parakeet.simulate.image(
-        config.config_filename,
-        optics_file=config.optics_filename,
-        image_file=config.image_filename,
-    )
-
     # save the image
     os.system(
         "parakeet.export {} -o {}".format(