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inconsistency between rDGIdb and the web interface #11

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ChrisSteel-bio opened this issue Dec 5, 2023 · 1 comment
Open

inconsistency between rDGIdb and the web interface #11

ChrisSteel-bio opened this issue Dec 5, 2023 · 1 comment

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@ChrisSteel-bio
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When searching for the gene "RPS3A" via the web interface 5 interactions are returned but for some reason the below code returns nothing. Why might this be?

library(rDGIdb)
test <- queryDGIdb(c("RPS3A"),
sourceDatabases = NULL,
geneCategories = NULL,
interactionTypes = NULL)
detailedResults(test)

@EW7721
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EW7721 commented Dec 22, 2023

I am having these issues as well. I am not certain but I think this is querying from DGIdb v2.0 and not more modern versions of the database. Unfortunately I think this package has thus become outdated.

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