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@cbg-ethz

Computational Biology Group (CBG)

Beerenwinkel Lab at ETH Zurich

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  1. V-pipe V-pipe Public

    V-pipe is a pipeline designed for analysing NGS data of short viral genomes

    Jupyter Notebook 132 46

Repositories

Showing 10 of 102 repositories
  • vpipe-biohack24-frontend Public

    Cloudification of V-Pipe: Frontend for the Biohackathon 2024

    cbg-ethz/vpipe-biohack24-frontend’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Nov 7, 2024
  • scDEF Public

    Deep exponential families for single-cell data.

    cbg-ethz/scDEF’s past year of commit activity
    Python 20 1 0 0 Updated Nov 7, 2024
  • lollipop-in-cloud Public

    On the fly variant deconvolution running in the cloud for on demand user requests.

    cbg-ethz/lollipop-in-cloud’s past year of commit activity
    Python 0 0 0 0 Updated Nov 7, 2024
  • oncotreeVIS Public

    An interactive graphical user interface for visualizing mutation tree cohorts.

    cbg-ethz/oncotreeVIS’s past year of commit activity
    JavaScript 0 MIT 0 0 0 Updated Nov 7, 2024
  • mt-SCITE Public

    Tree inference from mitochondrial mutations

    cbg-ethz/mt-SCITE’s past year of commit activity
    Jupyter Notebook 4 1 0 0 Updated Nov 6, 2024
  • covvfit Public

    Fitness estimates of SARS-CoV-2 variants

    cbg-ethz/covvfit’s past year of commit activity
    Python 0 MIT 0 0 1 Updated Nov 5, 2024
  • cowwid Public

    Procedure used fro the surveillance of SARS-CoV-2 genomic variants in wastewater.

    cbg-ethz/cowwid’s past year of commit activity
    Jupyter Notebook 7 0 1 0 Updated Nov 5, 2024
  • SCITE-RNA Public
    cbg-ethz/SCITE-RNA’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Nov 5, 2024
  • tupro-evolutionary-landscapes Public
    cbg-ethz/tupro-evolutionary-landscapes’s past year of commit activity
    0 0 0 0 Updated Nov 4, 2024
  • bmi Public

    Mutual information estimators and benchmark

    cbg-ethz/bmi’s past year of commit activity
    Python 36 MIT 5 8 2 Updated Nov 4, 2024
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