Test template #199
zkamvarAnnotations
69 warnings
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check-template
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/checkout@v3, actions/[email protected]. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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check-template:
index.md#L19
[missing anchor]: [Setup](#setup-instructions-for-your-workshop)
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check-template:
index.md#L38
[missing file]: [More information on this dataset](data.md)
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check-template:
setup-python-workshop.Rmd#L12
[uninformative link text]: [Link](https://www.libreoffice.org/download/download/)
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check-template:
setup-python-workshop.Rmd#L12
[uninformative link text]: [Link](https://documentation.libreoffice.org/en/english-documentation/)
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check-template:
setup-python-workshop.Rmd#L13
[needs HTTPS]: [Link](http://openrefine.org/download.html) [uninformative link text]: [Link](http://openrefine.org/download.html)
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check-template:
setup-python-workshop.Rmd#L13
[needs HTTPS]: [Link](http://openrefine.org/documentation.html) [uninformative link text]: [Link](http://openrefine.org/documentation.html)
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check-template:
setup-python-workshop.Rmd#L15
[needs HTTPS]: [Link](http://sqlitebrowser.org/dl/) [uninformative link text]: [Link](http://sqlitebrowser.org/dl/)
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check-template:
setup-python-workshop.Rmd#L15
[uninformative link text]: [Link](https://github.com/sqlitebrowser/sqlitebrowser/wiki)
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check-template:
setup-r-workshop.Rmd#L12
[uninformative link text]: [Link](https://www.libreoffice.org/download/download/)
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check-template:
setup-r-workshop.Rmd#L12
[uninformative link text]: [Link](https://documentation.libreoffice.org/en/english-documentation/)
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R for Social Scientists
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/checkout@v3, actions/[email protected]. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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R for Social Scientists:
episodes/00-intro.Rmd#L149
[unknown div] row
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R for Social Scientists:
episodes/00-intro.Rmd#L151
[unknown div] col-md-6
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R for Social Scientists:
episodes/00-intro.Rmd#L159
[unknown div] col-md-6
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R for Social Scientists:
episodes/01-intro-to-r.Rmd#L86
[uninformative link text]: [here](https://stat.ethz.ch/R-manual/R-devel/library/base/html/Reserved.html)
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R for Social Scientists:
episodes/02-starting-with-data.Rmd#L108
[uninformative link text]: [here](https://www.tidyverse.org/)
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R for Social Scientists:
episodes/02-starting-with-data.Rmd#L189
[uninformative link text]: [here](https://tibble.tidyverse.org/)
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R for Social Scientists:
episodes/04-tidyr.Rmd#L61
[image missing alt-text]: fig/tidy-data-wickham.png
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R for Social Scientists:
episodes/04-tidyr.Rmd#L131
[image missing alt-text]: fig/tidyr-pivot_wider_longer.gif
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R for Social Scientists:
episodes/06-rmarkdown.Rmd#L313
[needs HTTPS]: [rhandsontable](http://jrowen.github.io/rhandsontable/)
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R for Social Scientists:
LICENSE.md#L28
[needs HTTPS]: [http://software-carpentry.org/](http://software-carpentry.org/)
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Workbench Documentation
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/checkout@v3, actions/[email protected]. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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Workbench Documentation:
learners/migrating-from-styles.md#L17
[unknown div] prereqs
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Workbench Documentation:
episodes/episodes.Rmd#L1044
[missing file]: [Example of Wrapped Alt Text (with apologies to William Carlos Williams)](fig/freezer.png)
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Workbench Documentation:
learners/setup.md#L30
[link text too short]: [R](https://cran.rstudio.org/)
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Workbench Documentation:
learners/migrating-from-styles.md#L35
[missing anchor]: [Set up the transition tools](#workflow-setup)
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Workbench Documentation:
learners/migrating-from-styles.md#L36
[missing anchor]: [Create an Rscript for your lesson](#Rscript)
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Workbench Documentation:
learners/migrating-from-styles.md#L37
[missing anchor]: [Run the transition tool](#transition)
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Workbench Documentation:
learners/migrating-from-styles.md#L38
[missing anchor]: [Set up your GitHub repository to receive the transitioned lesson](#github)
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Workbench Documentation:
learners/migrating-from-styles.md#L39
[missing anchor]: [Post-transition steps](#post-transition)
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Workbench Documentation:
learners/migrating-from-styles.md#L91
[missing anchor]: [custom workflows](#custom-workflows)
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Workbench Documentation:
learners/migrating-from-styles.md#L153
[missing anchor]: [Create an Rscript for your lesson](#Rscript)
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Ecology Workshop
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/checkout@v3, actions/[email protected]. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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Ecology Workshop:
index.md#L19
[missing anchor]: [Setup](#setup-instructions-for-your-workshop)
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Ecology Workshop:
index.md#L38
[missing file]: [More information on this dataset](data.md)
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Ecology Workshop:
setup-python-workshop.Rmd#L12
[uninformative link text]: [Link](https://www.libreoffice.org/download/download/)
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Ecology Workshop:
setup-python-workshop.Rmd#L12
[uninformative link text]: [Link](https://documentation.libreoffice.org/en/english-documentation/)
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Ecology Workshop:
setup-python-workshop.Rmd#L13
[needs HTTPS]: [Link](http://openrefine.org/download.html) [uninformative link text]: [Link](http://openrefine.org/download.html)
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Ecology Workshop:
setup-python-workshop.Rmd#L13
[needs HTTPS]: [Link](http://openrefine.org/documentation.html) [uninformative link text]: [Link](http://openrefine.org/documentation.html)
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Ecology Workshop:
setup-python-workshop.Rmd#L15
[needs HTTPS]: [Link](http://sqlitebrowser.org/dl/) [uninformative link text]: [Link](http://sqlitebrowser.org/dl/)
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Ecology Workshop:
setup-python-workshop.Rmd#L15
[uninformative link text]: [Link](https://github.com/sqlitebrowser/sqlitebrowser/wiki)
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Ecology Workshop:
setup-r-workshop.Rmd#L12
[uninformative link text]: [Link](https://www.libreoffice.org/download/download/)
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Ecology Workshop:
setup-r-workshop.Rmd#L12
[uninformative link text]: [Link](https://documentation.libreoffice.org/en/english-documentation/)
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Instructor Training
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/checkout@v3, actions/[email protected]. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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Instructor Training:
episodes/15-carpentries.md#L240
[missing file]: [Markdown](template-md)
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Instructor Training:
episodes/15-carpentries.md#L241
[missing file]: [RMarkdown](template-rmd)
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check-template
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/checkout@v3, actions/[email protected]. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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check-template:
LICENSE.md#L28
[needs HTTPS]: [http://software-carpentry.org/](http://software-carpentry.org/)
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check-template:
LICENSE.md#L76
[needs HTTPS]: [Community Initiatives](http://communityin.org/)
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check-template:
index.md#L37
[needs HTTPS]: [Introduction to R for Geospatial Data](http://www.datacarpentry.org/r-intro-geospatial/)
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check-template:
index.md#L45
[needs HTTPS]: [Introduction to Geospatial Concepts](http://www.datacarpentry.org/organization-geospatial/)
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check-template:
index.md#L52
[needs HTTPS]: [Geospatial Workshop Overview](http://www.datacarpentry.org/geospatial-workshop/#setup)
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check-template:
index.md#L58
[needs HTTPS]: [setup instructions](http://www.datacarpentry.org/geospatial-workshop/#setup)
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check-template:
learners/reference.md#L9
[needs HTTPS]: [Geocomputation with R](http://robinlovelace.net/geocompr/)
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check-template:
learners/setup.md#L6
[needs HTTPS]: [Data Carpentry Geospatial workshop](http://www.datacarpentry.org/geospatial-workshop/)
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Raster and Vector Geospatial Data with R
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/checkout@v3, actions/[email protected]. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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Raster and Vector Geospatial Data with R:
LICENSE.md#L28
[needs HTTPS]: [http://software-carpentry.org/](http://software-carpentry.org/)
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Raster and Vector Geospatial Data with R:
LICENSE.md#L76
[needs HTTPS]: [Community Initiatives](http://communityin.org/)
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Raster and Vector Geospatial Data with R:
index.md#L37
[needs HTTPS]: [Introduction to R for Geospatial Data](http://www.datacarpentry.org/r-intro-geospatial/)
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Raster and Vector Geospatial Data with R:
index.md#L45
[needs HTTPS]: [Introduction to Geospatial Concepts](http://www.datacarpentry.org/organization-geospatial/)
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Raster and Vector Geospatial Data with R:
index.md#L52
[needs HTTPS]: [Geospatial Workshop Overview](http://www.datacarpentry.org/geospatial-workshop/#setup)
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Raster and Vector Geospatial Data with R:
index.md#L58
[needs HTTPS]: [setup instructions](http://www.datacarpentry.org/geospatial-workshop/#setup)
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Raster and Vector Geospatial Data with R:
learners/reference.md#L9
[needs HTTPS]: [Geocomputation with R](http://robinlovelace.net/geocompr/)
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Raster and Vector Geospatial Data with R:
learners/setup.md#L6
[needs HTTPS]: [Data Carpentry Geospatial workshop](http://www.datacarpentry.org/geospatial-workshop/)
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BioConductor RNAseq
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/checkout@v3, actions/[email protected]. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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BioConductor RNAseq:
episodes/07-gene-set-analysis.Rmd#L530
[image missing alt-text]: fig/geneset.svg
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BioConductor RNAseq:
episodes/07-gene-set-analysis.Rmd#L850
[image missing alt-text]: fig/msigdb.png
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BioConductor RNAseq:
episodes/07-gene-set-analysis.Rmd#L1536
[image missing alt-text]: fig/simplifyEnrichment.png
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