Add verification step for raw GEO data vs. prepared CSV #105
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Show that the CSV file provided does in fact contain the same information as the raw data files deposited on GEO for each GSM.
🆗 Pre-flight checks passed 😃This pull request has been checked and contains no modified workflow files, spoofing, or invalid commits. It should be safe to Approve and Run the workflows that need maintainer approval. |
One needs to use "[[" rather than `[[` in webR (I know not why). Also, breaking up the challenge solution with comments is more considerate of the learner's attention.
like it says on the tin. should ensure build check passes...
Check that compiled counts are the same as from the raw data.
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Got rid of the GEOquery dependency and now this just uses base R. |
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Show the CSV file provided contains the same information as the raw data files deposited on GEO for each GSM.
Trust, but verify -- provenance is important and we cannot cut corners if we want to teach reproducible analysis skills.