GitHub - cactuskid/phyloprofiling: phylo profile pipeline

Phylogenetic profiler using Hierarchical orthologous group (HOG) from the OMA database.

lshbuilder -> build the object containing all the profiles and their distance

profiler -> use to interrogate the lsh

Name		Name	Last commit message	Last commit date
Latest commit History 437 Commits
.ipynb_checkpoints		.ipynb_checkpoints
GOPreprocessing		GOPreprocessing
ortho2tree		ortho2tree
preprocessing		preprocessing
results		results
testdata		testdata
tests		tests
tutorial		tutorial
utils		utils
validation		validation
visualization		visualization
.gitignore		.gitignore
GOenrichment pandas.ipynb		GOenrichment pandas.ipynb
HogNet.py		HogNet.py
README.md		README.md
Validation.ipynb		Validation.ipynb
__init__.py		__init__.py
kerasopt.py		kerasopt.py
lsfproto.txt		lsfproto.txt
lsfspawn.py		lsfspawn.py
lshbuilder.py		lshbuilder.py
lshoptimizer.oy		lshoptimizer.oy
lshoptimizer.py		lshoptimizer.py
mastertree.nwk		mastertree.nwk
mastertree.pkl		mastertree.pkl
multisets_test.ipynb		multisets_test.ipynb
observations.txt		observations.txt
profiler.py		profiler.py
profilingFlask.py		profilingFlask.py
recover weights.ipynb		recover weights.ipynb
run_profiler.py		run_profiler.py
run_profiler_manual.py		run_profiler_manual.py
setup.py		setup.py
validation_dataset.ipynb		validation_dataset.ipynb

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